SMTL ID : 4j8l.1 (1 other biounit)

CRYSTAL STRUCTURE OF THE PYRIDOXAL-5'-PHOSPHATE DEPENDENT protein YhfS from Escherichia coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 5 residues within 4Å: Chain A: F.285, H.286, Q.287, P.288, C.336 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:C.336, H2O.9, H2O.9

3 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 6 residues within 4Å: Chain A: A.276, I.282, L.322, S.323, F.326, R.339 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.276, A:I.282, A:F.326 Hydrogen bonds: A:S.323 Water bridges: A:T.325 Salt bridges: A:R.339 ACY.3: 4 residues within 4Å: Chain A: E.33, R.50, V.51, R.54 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.33 Salt bridges: A:R.50, A:R.54 ACY.4: 5 residues within 4Å: Chain A: L.6, S.8, K.177, V.178, K.279 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.6, A:K.177, A:V.178, A:K.279 Hydrogen bonds: A:S.8 Water bridges: A:S.8, A:K.177, A:K.279 Salt bridges: A:K.177, A:K.279

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 6 residues within 4Å: Chain A: Y.173, V.280, L.318, Y.320, R.339, N.341 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.173, A:Y.173, A:N.341

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fedorov, A.A. et al., Crystal structure of the pyridoxal-5'-phosphate dependent protein yhfs from escherichia coli. To be Published

Release Date

2014-03-05

Peptides

Uncharacterized protein YhfS: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein YhfS

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