SMTL ID : 4j95.6 (5 other biounits)

Crystal Structure of FGF Receptor 2 (FGFR2) Kinase Domain Harboring the Pathogenic K659N Mutation Responsible for an Unclassified Craniosynostosis Syndrome in Space Group C2.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

homo-dimer

Ligands

2 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.1: 16 residues within 4Å: Chain A: L.43, E.45, G.46, A.47, V.51, A.71, K.73, V.120, E.121, A.123, N.127, R.186, N.187, L.189, D.200 Chain B: D.78 7 PLIP interactions: 2 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:D.78, B:D.78, A:A.47, A:E.121, A:A.123, A:N.127 Salt bridges: A:K.73 ACP.5: 15 residues within 4Å: Chain B: L.43, G.46, A.47, F.48, V.51, A.71, K.73, V.120, E.121, Y.122, A.123, N.127, N.187, L.189, D.200 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:A.47, B:F.48, B:G.49, B:K.73, B:E.121, B:A.123, B:N.127 Water bridges: B:D.200, B:D.200 Salt bridges: B:K.73

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.181, R.205, Y.213, N.215, T.216 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.213, A:T.216 Salt bridges: A:R.181, A:R.205 SO4.3: 4 residues within 4Å: Chain A: T.191, E.192, N.193, V.195 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.191, A:T.191, A:E.192, A:N.193, A:N.193 SO4.4: 1 residues within 4Å: Chain A: R.293 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.293 SO4.6: 3 residues within 4Å: Chain B: R.181, R.205, R.220 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.220 Salt bridges: B:R.181, B:R.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, H. et al., Cracking the Molecular Origin of Intrinsic Tyrosine Kinase Activity through Analysis of Pathogenic Gain-of-Function Mutations. Cell Rep (2013)

Release Date

2013-08-07

Peptides

Fibroblast growth factor receptor 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Fibroblast growth factor receptor 2

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