SMTL ID : 4j9s.1

Human DNA polymerase eta-DNA translocated binary complex: with TA base pair

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x DA- DC- DG- DT- DC- DA- DT- DA: DNA (5'-D(*TP*AP*CP*GP*TP*CP*AP*TP*A)-3')(Non-covalent)

DA-DC-DG-DT-DC-DA-DT-DA.1: 27 residues within 4Å: Chain A: R.64, D.118, K.227, I.258, R.259, S.260, L.261, G.262, G.263, K.264, L.265, Q.368, R.380, L.384, R.385, R.386, C.387, K.431 Chain B: T.4, T.5, A.6, T.7, G.8, A.9, C.10, G.11, T.12 Protein-ligand interaction information (PLIP) not available

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: P.247, F.250, S.251, G.279, E.280 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.250 Water bridges: A:T.282 GOL.3: 3 residues within 4Å: Chain A: N.29, P.30, H.31 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.29, A:H.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Mechanism of somatic hypermutation at the WA motif by human DNA polymerase eta. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-05-01

Peptides

DNA polymerase eta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase eta

Related Entries With Identical Sequence