- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 1 x 1K9: 1-[5-(cyclopropylsulfamoyl)-2-thiophen-3-yl-phenyl]-3-[3-(trifluoromethyl)phenyl]urea(Non-covalent)
1K9.2: 20 residues within 4Å:- Chain A: W.124, V.254, V.257, Y.271, D.272, V.275, Q.276, I.279
- Chain B: L.120, W.124, V.254, V.257, L.258, W.266, Y.271, D.272, V.275, Q.276, I.279, L.280
16 PLIP interactions:9 interactions with chain B, 7 interactions with chain A- Hydrophobic interactions: B:L.120, B:W.124, B:L.258, B:V.275, B:I.279, B:L.280, A:V.275, A:I.279, A:I.279
- Hydrogen bonds: B:Q.276, B:Q.276, A:Q.276, A:Q.276, A:Q.276
- Halogen bonds: B:Q.276, A:Y.271
- 2 x CA: CALCIUM ION(Non-covalent)
CA.3: 3 residues within 4Å:- Chain A: D.274, D.278
- Chain B: D.251
5 PLIP interactions:1 interactions with chain B, 1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: B:D.251, A:D.274, H2O.11, H2O.19, H2O.19
CA.9: 3 residues within 4Å:- Chain A: D.251
- Chain B: D.274, D.278
5 PLIP interactions:1 interactions with chain A, 2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: A:D.251, B:D.274, B:D.278, H2O.19, H2O.27
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 6 residues within 4Å:- Chain A: D.231, K.232, H.233, Y.234, K.235, T.236
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:H.233, A:K.235, A:T.236, A:T.236
- Water bridges: A:D.237
GOL.5: 4 residues within 4Å:- Chain A: T.77, S.94, N.96
- Ligands: NDP.1
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.94, A:S.94, A:N.96
GOL.6: 7 residues within 4Å:- Chain A: F.144, V.145, A.146, D.147, R.148
- Chain B: F.156, K.165
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:V.145, A:D.147, B:K.165
- Water bridges: A:R.148
GOL.7: 4 residues within 4Å:- Chain A: E.364, T.365, S.368, N.404
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.364
- Water bridges: A:K.360
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, F. et al., Targeted inhibition of mutant IDH2 in leukemia cells induces cellular differentiation. Science (2013)
- Release Date
- 2013-04-10
- Peptides
- Isocitrate dehydrogenase [NADP], mitochondrial: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 1 x 1K9: 1-[5-(cyclopropylsulfamoyl)-2-thiophen-3-yl-phenyl]-3-[3-(trifluoromethyl)phenyl]urea(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, F. et al., Targeted inhibition of mutant IDH2 in leukemia cells induces cellular differentiation. Science (2013)
- Release Date
- 2013-04-10
- Peptides
- Isocitrate dehydrogenase [NADP], mitochondrial: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B