SMTL ID : 4jac.1 (1 other biounit)

Dehaloperoxidase-Hemoglobin T56S

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 19 residues within 4Å: Chain A: F.25, E.32, Y.35, F.36, H.56, K.59, V.60, L.63, M.64, L.84, M.87, Q.89, H.90, L.93, N.97, F.98, L.101, L.128 Ligands: AZI.5 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:F.25, A:Y.35, A:F.36, A:K.59, A:V.60, A:V.60, A:L.63, A:L.84, A:Q.89, A:L.93, A:L.93, A:F.98, A:L.101, A:L.128 Hydrogen bonds: A:Q.89 Water bridges: A:H.56 Salt bridges: A:K.59 pi-Stacking: A:H.56, A:H.56 Metal complexes: A:H.90

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: G.2, F.3, K.4, D.117 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:F.3, A:K.4, A:D.117 Water bridges: A:G.2, A:Q.5, A:S.120 SO4.3: 4 residues within 4Å: Chain A: R.33, V.40, G.41, K.42 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.41, A:K.42 Salt bridges: A:R.33

2 x AZI: AZIDE ION(Non-covalent)

AZI.4: 2 residues within 4Å: Chain A: N.82, T.83 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.82, A:T.83 AZI.5: 5 residues within 4Å: Chain A: F.22, F.36, H.56, V.60 Ligands: HEM.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, S. et al., The role of T56 in controlling the flexibility of the distal histidine in dehaloperoxidase-hemoglobin from Amphitrite ornata. Biochim.Biophys.Acta (2013)

Release Date

2013-11-27

Peptides

Dehaloperoxidase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dehaloperoxidase A

Related Entries With Identical Sequence