- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 6 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
NAI.3: 18 residues within 4Å:- Chain A: T.106, T.108, R.109, H.110, T.111, M.112, I.113, H.114, Y.145, R.155, E.158, I.159, F.162, R.163, K.167, N.189
- Chain C: Q.182, C.206
18 PLIP interactions:17 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:I.159, A:F.162
- Hydrogen bonds: A:T.111, A:M.112, A:H.114, A:H.114, A:R.155, A:R.155, A:E.158, A:N.189, A:N.189, C:Q.182
- Water bridges: A:R.163
- Salt bridges: A:H.110, A:R.163, A:K.167, A:K.167
- pi-Stacking: A:H.110
NAI.6: 19 residues within 4Å:- Chain B: T.106, T.108, R.109, H.110, T.111, M.112, I.113, H.114, Y.145, D.147, R.155, I.159, F.162, R.163, K.167, N.189
- Chain F: Q.182, T.204, C.206
23 PLIP interactions:22 interactions with chain B, 1 interactions with chain F- Hydrophobic interactions: B:I.159, B:F.162, B:R.163
- Hydrogen bonds: B:T.111, B:M.112, B:M.112, B:H.114, B:H.114, B:Y.145, B:D.147, B:R.155, B:R.155, B:N.189, B:N.189
- Water bridges: B:T.111, B:E.115, B:E.158, F:I.180
- Salt bridges: B:H.110, B:R.163, B:K.167, B:K.167
- pi-Stacking: B:H.110
NAI.9: 18 residues within 4Å:- Chain C: T.106, T.108, R.109, H.110, T.111, M.112, I.113, H.114, Y.145, R.155, E.158, I.159, F.162, R.163, K.167, N.189
- Chain E: Q.182, C.206
18 PLIP interactions:17 interactions with chain C, 1 interactions with chain E- Hydrophobic interactions: C:I.159, C:F.162
- Hydrogen bonds: C:T.111, C:M.112, C:H.114, C:H.114, C:R.155, C:R.155, C:E.158, C:N.189, C:N.189, E:Q.182
- Water bridges: C:R.163
- Salt bridges: C:H.110, C:R.163, C:K.167, C:K.167
- pi-Stacking: C:H.110
NAI.12: 19 residues within 4Å:- Chain B: Q.182, T.204, C.206
- Chain D: T.106, T.108, R.109, H.110, T.111, M.112, I.113, H.114, Y.145, D.147, R.155, I.159, F.162, R.163, K.167, N.189
23 PLIP interactions:22 interactions with chain D, 1 interactions with chain B- Hydrophobic interactions: D:I.159, D:F.162, D:R.163
- Hydrogen bonds: D:T.111, D:M.112, D:M.112, D:H.114, D:H.114, D:Y.145, D:D.147, D:R.155, D:R.155, D:N.189, D:N.189
- Water bridges: D:T.111, D:E.115, D:E.158, B:I.180
- Salt bridges: D:H.110, D:R.163, D:K.167, D:K.167
- pi-Stacking: D:H.110
NAI.15: 18 residues within 4Å:- Chain A: Q.182, C.206
- Chain E: T.106, T.108, R.109, H.110, T.111, M.112, I.113, H.114, Y.145, R.155, E.158, I.159, F.162, R.163, K.167, N.189
18 PLIP interactions:17 interactions with chain E, 1 interactions with chain A- Hydrophobic interactions: E:I.159, E:F.162
- Hydrogen bonds: E:T.111, E:M.112, E:H.114, E:H.114, E:R.155, E:R.155, E:E.158, E:N.189, E:N.189, A:Q.182
- Water bridges: E:R.163
- Salt bridges: E:H.110, E:R.163, E:K.167, E:K.167
- pi-Stacking: E:H.110
NAI.18: 19 residues within 4Å:- Chain D: Q.182, T.204, C.206
- Chain F: T.106, T.108, R.109, H.110, T.111, M.112, I.113, H.114, Y.145, D.147, R.155, I.159, F.162, R.163, K.167, N.189
23 PLIP interactions:22 interactions with chain F, 1 interactions with chain D- Hydrophobic interactions: F:I.159, F:F.162, F:R.163
- Hydrogen bonds: F:T.111, F:M.112, F:M.112, F:H.114, F:H.114, F:Y.145, F:D.147, F:R.155, F:R.155, F:N.189, F:N.189
- Water bridges: F:T.111, F:E.115, F:E.158, D:I.180
- Salt bridges: F:H.110, F:R.163, F:K.167, F:K.167
- pi-Stacking: F:H.110
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Duckworth, H.W. et al., Enzyme-substrate complexes of allosteric citrate synthase: Evidence for a novel intermediate in substrate binding. Biochim.Biophys.Acta (2013)
- Release Date
- 2013-07-17
- Peptides
- Citrate synthase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 6 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Duckworth, H.W. et al., Enzyme-substrate complexes of allosteric citrate synthase: Evidence for a novel intermediate in substrate binding. Biochim.Biophys.Acta (2013)
- Release Date
- 2013-07-17
- Peptides
- Citrate synthase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B