SMTL ID : 4jb1.1

Crystal structure of P. aeruginosa MurB in complex with NADP+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 33 residues within 4Å: Chain A: T.17, V.52, I.53, G.54, G.55, G.56, S.57, N.58, L.59, I.118, P.119, G.120, T.121, A.124, M.127, Q.128, I.130, G.131, A.132, R.167, W.178, L.179, I.180, R.225, P.230, P.232, N.237, A.238, G.239, E.336, N.338, Y.340 Ligands: NAP.2 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:P.119, A:P.232 Hydrogen bonds: A:G.54, A:G.55, A:G.56, A:S.57, A:S.57, A:N.58, A:N.58, A:T.121, A:G.131, A:G.131, A:I.180, A:I.180, A:R.225, A:R.225, A:N.338, A:Y.340 Water bridges: A:P.119, A:T.121, A:A.124, A:A.124

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 17 residues within 4Å: Chain A: A.132, Y.133, R.167, D.196, Y.197, R.225, K.228, L.229, G.239, S.240, N.244, Y.265, K.273, A.275, E.336 Ligands: FAD.1, GOL.7 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.229 Hydrogen bonds: A:Y.133, A:R.167, A:D.196, A:Y.197, A:R.225, A:S.240, A:N.244, A:K.273, A:E.336 Water bridges: A:D.196, A:K.228, A:N.244, A:Q.299 Salt bridges: A:K.228, A:K.228, A:K.273 pi-Stacking: A:Y.197, A:Y.265

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: G.283, G.284, W.285, F.288, D.324, R.328 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.284, A:D.324, A:R.328 GOL.4: 3 residues within 4Å: Chain A: G.208, I.209, A.210 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.210 Water bridges: A:S.211 GOL.5: 5 residues within 4Å: Chain A: G.111, V.135, D.139, V.140, H.194 No protein-ligand interaction detected (PLIP) GOL.6: 5 residues within 4Å: Chain A: L.117, P.119, R.226, D.231, P.232 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.117, A:R.226, A:R.226, A:D.231 GOL.7: 10 residues within 4Å: Chain A: G.131, A.132, Y.133, G.134, V.135, E.136, Y.166, R.167, Y.197 Ligands: NAP.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:A.132, A:G.134, A:V.135, A:E.136, A:R.167, A:R.167 Water bridges: A:E.136, A:Y.197 GOL.8: 6 residues within 4Å: Chain A: R.315, A.318, E.319, Q.322, P.335, L.339 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.319, A:Q.322

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, M.W. et al., Substrate Channel Flexibility in Pseudomonas aeruginosa MurB Accommodates Two Distinct Substrates. Plos One (2013)

Release Date

2013-07-17

Peptides

UDP-N-acetylenolpyruvoylglucosamine reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-N-acetylenolpyruvoylglucosamine reductase

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