SMTL ID : 4jc1.1

Galectin-3 carbohydrate recognition domain in complex with thiodigalactoside

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x YIO- GAL: beta-D-galactopyranose-(1-1)-1-thio-beta-D-galactopyranose(Non-covalent)

YIO-GAL.1: 7 residues within 4Å: Chain A: H.51, N.53, R.55, N.67, W.74, E.77, R.79 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.55, A:R.55, A:E.77, A:R.79, A:R.55, A:N.67 Water bridges: A:E.58, A:H.51, A:N.53

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: V.118, K.119, K.120 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: Q.43, G.45, E.123, S.125 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: F.56, R.62, E.86, S.87 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: R.37, N.53, R.55 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: E.98, D.100, H.101 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bum-Erdene, K. et al., Investigation into the feasibility of thioditaloside as a novel scaffold for galectin-3-specific inhibitors. Chembiochem (2013)

Release Date

2013-07-31

Peptides

Galectin-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Galectin-3

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