- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- monomer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 9 x GOL: GLYCEROL(Non-functional Binders)
GOL.9: 8 residues within 4Å:- Chain A: I.190, Y.191, P.235, F.236, G.237, Y.627, Y.639, D.640
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:Y.191, A:F.236, A:G.237, A:D.640, A:D.640
- Water bridges: A:M.234
GOL.10: 7 residues within 4Å:- Chain A: K.212, I.215, D.216, S.245, I.246, G.249, H.251
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.245
- Water bridges: A:I.246, A:G.249, A:D.250, A:D.250
GOL.11: 9 residues within 4Å:- Chain A: Y.100, H.140, L.194, Y.195, L.197, D.229, A.230
- Ligands: GOL.16, EDO.20
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.229
GOL.12: 5 residues within 4Å:- Chain A: E.81, Q.107, T.108, D.110
- Ligands: GOL.13
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.81, A:T.108
- Water bridges: A:T.108, A:D.110
GOL.13: 7 residues within 4Å:- Chain A: E.81, R.103, D.104, Q.107, Y.158, G.161
- Ligands: GOL.12
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.104, A:D.104
GOL.14: 4 residues within 4Å:- Chain A: A.144, D.145, F.151, D.196
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.145, A:D.196, A:D.196
GOL.15: 6 residues within 4Å:- Chain A: T.67, G.70, V.71, T.72, H.128, N.129
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:V.71
GOL.16: 8 residues within 4Å:- Chain A: K.47, N.94, H.98, W.101, D.372, R.376
- Ligands: GOL.11, EDO.20
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:K.47, A:N.94, A:H.98, A:W.101, A:D.372, A:R.376, A:R.376
GOL.17: 3 residues within 4Å:- Chain A: D.29, D.114, D.117
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.31, A:D.114, A:D.117
- Water bridges: A:T.31, A:N.32
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.18: 9 residues within 4Å:- Chain A: Q.19, V.21, W.75, S.77, H.98, Y.100, D.135, R.227, H.328
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.19, A:W.75, A:R.227
- Water bridges: A:Q.78
EDO.19: 5 residues within 4Å:- Chain A: K.106, D.159, A.209, Y.210, S.213
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.106, A:K.106, A:S.213
EDO.20: 7 residues within 4Å:- Chain A: Y.89, W.101, D.196, L.197
- Ligands: GOL.11, GOL.16, EDO.27
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.89
EDO.21: 4 residues within 4Å:- Chain A: N.275, E.276, D.316, K.561
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.276, A:E.276
- Water bridges: A:N.275
EDO.22: 5 residues within 4Å:- Chain A: Q.334, V.335, A.336, G.337, S.338
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.337, A:S.338
EDO.23: 3 residues within 4Å:- Chain A: Q.629
- Ligands: EDO.24, PEG.29
3 PLIP interactions:3 interactions with chain A- Water bridges: A:N.628, A:N.628, A:N.628
EDO.24: 4 residues within 4Å:- Chain A: Q.629, K.633, Y.634
- Ligands: EDO.23
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.629
EDO.25: 2 residues within 4Å:- Chain A: N.62
- Ligands: EDO.26
No protein-ligand interaction detected (PLIP)EDO.26: 5 residues within 4Å:- Chain A: Q.55, I.58, D.59, N.120
- Ligands: EDO.25
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.55, A:D.59, A:N.120
- Water bridges: A:N.62
EDO.27: 1 residues within 4Å:- Ligands: EDO.20
No protein-ligand interaction detected (PLIP)- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.28: 4 residues within 4Å:- Chain A: E.412, R.413, W.414, V.415
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:V.415
PEG.29: 8 residues within 4Å:- Chain A: T.599, N.600, Y.601, G.602, T.603, N.604, Y.634
- Ligands: EDO.23
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.599, A:G.602
- Water bridges: A:N.628
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wu, L. et al., Crystal Structure of Alpha-Cgt from Paenibacillus Macerans at 1.7 Angstrom Resolution. To be Published
- Release Date
- 2014-02-26
- Peptides
- Cyclomaltodextrin glucanotransferase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- monomer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 9 x GOL: GLYCEROL(Non-functional Binders)
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wu, L. et al., Crystal Structure of Alpha-Cgt from Paenibacillus Macerans at 1.7 Angstrom Resolution. To be Published
- Release Date
- 2014-02-26
- Peptides
- Cyclomaltodextrin glucanotransferase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A