SMTL ID : 4jd2.1

Crystal structure of Bos taurus Arp2/3 complex binding with Mus musculus GMF

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.08 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.11, K.18, D.169 Ligands: ATP.2 No protein-ligand interaction detected (PLIP) CA.3: 3 residues within 4Å: Chain B: D.12, K.19 Ligands: ATP.4 No protein-ligand interaction detected (PLIP)

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 20 residues within 4Å: Chain A: G.13, T.14, G.15, Y.16, K.18, D.169, G.171, D.172, G.173, V.174, G.197, K.225, K.228, E.229, G.323, G.324, S.325, M.327, F.328 Ligands: CA.1 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:T.14, A:T.14, A:G.15, A:Y.16, A:Y.16, A:D.172, A:D.172, A:G.173, A:V.174, A:K.225, A:K.225, A:K.228, A:E.229, A:G.324 Salt bridges: A:K.18, A:K.18 pi-Stacking: A:F.328 ATP.4: 22 residues within 4Å: Chain B: G.14, T.15, G.16, F.17, K.19, D.158, G.160, D.161, G.162, V.163, G.186, R.187, R.214, K.217, E.218, G.305, G.306, S.307, M.309, Y.310, K.351 Ligands: CA.3 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:T.15, B:G.16, B:F.17, B:F.17, B:D.161, B:D.161, B:D.161, B:G.162, B:V.163, B:K.217, B:G.306 Salt bridges: B:K.19, B:K.19, B:K.19 pi-Stacking: B:Y.310

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.5: 7 residues within 4Å: Chain B: K.322, L.337, F.340, I.342 Chain G: V.16, Y.19, D.20 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.225, B:Y.225, B:K.322 PG4.6: 6 residues within 4Å: Chain A: E.401, E.402, I.403, G.404 Chain F: K.107, P.108 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:K.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luan, Q. et al., Structural basis for regulation of Arp2/3 complex by GMF. Nat.Struct.Mol.Biol. (2013)

Release Date

2013-07-17

Peptides

Actin-related protein 3: A
Actin-related protein 2: B
Actin-related protein 2/3 complex subunit 1B: C
Actin-related protein 2/3 complex subunit 2: D
Actin-related protein 2/3 complex subunit 3: E
Actin-related protein 2/3 complex subunit 4: F
Actin-related protein 2/3 complex subunit 5: G
Glia maturation factor gamma: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Actin-related protein 3

Actin-related protein 2

Actin-related protein 2/3 complex subunit 1B

Actin-related protein 2/3 complex subunit 2

Actin-related protein 2/3 complex subunit 3

Actin-related protein 2/3 complex subunit 4

Actin-related protein 2/3 complex subunit 5

Glia maturation factor gamma

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