SMTL ID : 4jdt.1

Crystal structure of chimeric germ-line precursor of NIH45-46 Fab in complex with gp120 of 93TH057 HIV-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.26 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: N.335, K.337, R.341 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.335 Salt bridges: A:K.337, A:R.341

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 7 residues within 4Å: Chain A: P.96, K.136, N.146, N.244, C.306, V.307, S.308 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.136, A:N.146, A:S.308

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scharf, L. et al., Structural basis for HIV-1 gp120 recognition by a germ-line version of a broadly neutralizing antibody. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-03-20

Peptides

gp120: A
Fab heavy chain: B
Fab light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
L

gp120

Fab heavy chain

Fab light chain

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