SMTL ID : 4jdy.1

Crystal structure of Rv2606c

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-12-mer

Ligands

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: D.19, M.38, K.76, F.228, V.229, G.230 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.76, A:K.76 Water bridges: A:G.209 GOL.2: 6 residues within 4Å: Chain B: D.19, M.38, K.76, F.228, V.229, G.230 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.76 Water bridges: B:G.208, B:I.210 GOL.3: 6 residues within 4Å: Chain C: D.19, M.38, K.76, F.228, V.229, G.230 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:K.76, C:K.76 Water bridges: C:G.208, C:G.209 GOL.4: 6 residues within 4Å: Chain D: D.19, M.38, K.76, F.228, V.229, G.230 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:K.76, D:K.76 Water bridges: D:G.209 GOL.5: 6 residues within 4Å: Chain E: D.19, M.38, K.76, F.228, V.229, G.230 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:K.76 Water bridges: E:G.208, E:I.210 GOL.6: 6 residues within 4Å: Chain F: D.19, M.38, K.76, F.228, V.229, G.230 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:K.76, F:K.76 Water bridges: F:G.208, F:G.209 GOL.7: 6 residues within 4Å: Chain G: D.19, M.38, K.76, F.228, V.229, G.230 3 PLIP interactions: 3 interactions with chain G Hydrogen bonds: G:K.76, G:K.76 Water bridges: G:G.209 GOL.8: 6 residues within 4Å: Chain H: D.19, M.38, K.76, F.228, V.229, G.230 4 PLIP interactions: 4 interactions with chain H Hydrogen bonds: H:K.76 Water bridges: H:D.19, H:G.208, H:I.210 GOL.9: 6 residues within 4Å: Chain I: D.19, M.38, K.76, F.228, V.229, G.230 5 PLIP interactions: 5 interactions with chain I Hydrogen bonds: I:K.76, I:K.76 Water bridges: I:D.19, I:G.208, I:G.209 GOL.10: 6 residues within 4Å: Chain J: D.19, M.38, K.76, F.228, V.229, G.230 3 PLIP interactions: 3 interactions with chain J Hydrogen bonds: J:K.76, J:K.76 Water bridges: J:G.209 GOL.11: 6 residues within 4Å: Chain K: D.19, M.38, K.76, F.228, V.229, G.230 4 PLIP interactions: 4 interactions with chain K Hydrogen bonds: K:K.76 Water bridges: K:D.19, K:G.208, K:I.210 GOL.12: 6 residues within 4Å: Chain L: D.19, M.38, K.76, F.228, V.229, G.230 5 PLIP interactions: 5 interactions with chain L Hydrogen bonds: L:K.76, L:K.76 Water bridges: L:D.19, L:G.208, L:G.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, S. et al., Crystal structure of Mycobacterium tuberculosis Rv2606c: a pyridoxal biosynthesis lyase. Biochem.Biophys.Res.Commun. (2013)

Release Date

2013-05-22

Peptides

Pyridoxal biosynthesis lyase PdxS: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

G
A

H
B

I
C

J
A

K
B

L
C

Pyridoxal biosynthesis lyase PdxS