SMTL ID : 4jej.1

GGGPS from Flavobacterium johnsoniae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

homo-dimer

Ligands

2 x 1GP: SN-GLYCEROL-1-PHOSPHATE(Non-covalent)

1GP.1: 19 residues within 4Å: Chain A: L.27, F.83, Y.134, Y.178, E.180, G.182, S.183, G.184, A.185, G.208, G.209, G.210, I.211, V.229, I.230, G.231, T.232 Ligands: MG.4, MG.5 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:Y.178, A:Y.178, A:E.180, A:S.183, A:S.183, A:G.184, A:G.209, A:G.210, A:G.231, A:T.232, A:T.232 1GP.6: 19 residues within 4Å: Chain B: L.27, F.83, Y.134, Y.178, E.180, G.182, S.183, G.184, A.185, G.208, G.209, G.210, I.211, V.229, I.230, G.231, T.232 Ligands: MG.9, MG.10 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:Y.178, B:Y.178, B:E.180, B:S.183, B:S.183, B:G.184, B:G.209, B:G.210, B:G.231, B:T.232, B:T.232

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 17 residues within 4Å: Chain A: P.84, G.85, D.86, P.87, I.90, I.97, F.99, L.100, S.101, L.102, Y.110, Y.114, Q.115, A.118, Y.134, V.145, S.149 No protein-ligand interaction detected (PLIP) PGE.7: 17 residues within 4Å: Chain B: P.84, G.85, D.86, P.87, I.90, I.97, F.99, L.100, S.101, L.102, Y.110, Y.114, Q.115, A.118, Y.134, V.145, S.149 No protein-ligand interaction detected (PLIP)

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 6 residues within 4Å: Chain A: S.104, G.105, R.106, N.107, T.151, E.152 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.106, A:E.152 PO4.8: 6 residues within 4Å: Chain B: S.104, G.105, R.106, N.107, T.151, E.152 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.106, B:E.152

4 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 9 residues within 4Å: Chain A: G.208, G.209, G.210, I.211, V.229, I.230, G.231 Ligands: 1GP.1, MG.5 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:V.229 MG.5: 8 residues within 4Å: Chain A: I.211, V.212, I.230, G.231, T.232, A.233 Ligands: 1GP.1, MG.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:I.211 MG.9: 9 residues within 4Å: Chain B: G.208, G.209, G.210, I.211, V.229, I.230, G.231 Ligands: 1GP.6, MG.10 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:V.229 MG.10: 8 residues within 4Å: Chain B: I.211, V.212, I.230, G.231, T.232, A.233 Ligands: 1GP.6, MG.9 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:I.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peterhoff, D. et al., A comprehensive analysis of the geranylgeranylglyceryl phosphate synthase enzyme family identifies novel members and reveals mechanisms of substrate specificity and quaternary structure organization. Mol.Microbiol. (2014)

Release Date

2014-06-25

Peptides

Geranylgeranylglyceryl phosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Geranylgeranylglyceryl phosphate synthase