- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 7 residues within 4Å:- Chain A: G.72, H.73, C.74, H.75, L.78, G.274
- Chain B: W.90
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:C.74, A:H.75
- Water bridges: B:W.90
EDO.3: 9 residues within 4Å:- Chain A: H.91, T.92, S.93, F.96
- Chain B: D.61, G.65, H.73, M.382
- Ligands: ACT.4
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:G.65, B:H.73, A:S.93, A:S.93
EDO.5: 7 residues within 4Å:- Chain A: M.120, E.125, E.128, T.129
- Chain B: T.124, R.159, S.160
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:T.124, A:T.129
- Water bridges: B:R.159, A:N.121
EDO.7: 2 residues within 4Å:- Chain A: P.320, L.323
No protein-ligand interaction detected (PLIP)EDO.10: 4 residues within 4Å:- Chain A: S.143, K.146, D.200, H.201
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.200
EDO.12: 7 residues within 4Å:- Chain A: W.90
- Chain B: G.72, H.73, C.74, H.75, L.78, G.274
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:C.74, B:H.75, A:W.90
EDO.13: 8 residues within 4Å:- Chain A: F.28, I.32, Y.36
- Chain B: N.94, T.97, N.98, A.101, G.302
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:T.97, B:G.301
- Water bridges: A:Y.36
EDO.14: 7 residues within 4Å:- Chain A: V.95
- Chain B: I.66, L.373, L.384, N.385, R.392
- Ligands: ACT.4
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.385, B:N.385, B:R.392
EDO.18: 3 residues within 4Å:- Chain B: H.75, I.316, V.398
No protein-ligand interaction detected (PLIP)- 5 x ACT: ACETATE ION(Non-functional Binders)
ACT.4: 9 residues within 4Å:- Chain A: S.93, V.95, F.96
- Chain B: A.63, G.65, M.382, L.384
- Ligands: EDO.3, EDO.14
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:L.384, A:V.95
- Hydrogen bonds: B:G.65, A:S.93, A:S.93
ACT.6: 3 residues within 4Å:- Chain A: I.183, I.184, H.185
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:H.185
- Salt bridges: A:H.185
ACT.9: 7 residues within 4Å:- Chain A: N.94, F.119, M.120, N.121, G.301, G.302, N.303
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:N.303
- Hydrogen bonds: A:N.94, A:G.302, A:N.303
- Water bridges: A:N.121, A:G.302
ACT.16: 3 residues within 4Å:- Chain B: I.183, I.184, H.185
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:H.185
- Salt bridges: B:H.185
ACT.17: 8 residues within 4Å:- Chain A: V.95
- Chain B: V.35, A.37, P.38, F.41, L.373, Y.374, A.377
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:V.35, B:L.373, B:Y.374, A:V.95
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bisht, S. et al., Conformational transitions, ligand specificity and catalysis in N-acetylornithine aminotransferase: Implications on drug designing and rational enzyme engineering in omega aminotransferases. To be Published
- Release Date
- 2014-03-26
- Peptides
- Acetylornithine/succinyldiaminopimelate aminotransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 5 x ACT: ACETATE ION(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bisht, S. et al., Conformational transitions, ligand specificity and catalysis in N-acetylornithine aminotransferase: Implications on drug designing and rational enzyme engineering in omega aminotransferases. To be Published
- Release Date
- 2014-03-26
- Peptides
- Acetylornithine/succinyldiaminopimelate aminotransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B