SMTL ID : 4jgr.1

The crystal structure of sporulation kinase D mutant sensor domain, R131A, from Bacillus subtilis subsp at 2.4A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.1: 7 residues within 4Å: Chain A: Y.116, S.118, R.119, I.120, I.125, T.127, V.144 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.125, A:T.127, A:V.144 Hydrogen bonds: A:Y.116, A:R.119 ACY.2: 6 residues within 4Å: Chain B: Y.74, Y.116, S.118, I.120, I.125, A.146 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Y.74, B:I.125, B:A.146 Hydrogen bonds: B:Y.116 Water bridges: B:S.118, B:I.120, B:I.120

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain B: Y.193, L.194, D.195, I.197, S.198 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.195 GOL.4: 5 residues within 4Å: Chain A: Y.31 Chain B: N.30, G.34, D.195, D.196 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.31, A:Y.31 GOL.5: 7 residues within 4Å: Chain B: Q.57, V.82, T.83, S.85, T.87, E.88, L.89 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.57, B:Q.57, B:V.82, B:S.85, B:L.89, B:L.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, R. et al., Insight into the sporulation phosphorelay: Crystal structure of the sensor domain of Bacillus subtilis histidine kinase, KinD. Protein Sci. (2013)

Release Date

2013-05-15

Peptides

Sporulation kinase D: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Sporulation kinase D

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