SMTL ID : 4jhi.1

Crystal Structure of Medicago truncatula Nodulin 13 (MtN13) in complex with N6-benzyladenine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: F.63, G.65 Chain B: A.93 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.63, A:G.65 NA.3: 3 residues within 4Å: Chain A: A.93 Chain B: F.63, G.65 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.65, A:A.93

2 x EMU: N-BENZYL-9H-PURIN-6-AMINE(Non-covalent)

EMU.2: 16 residues within 4Å: Chain A: L.61, T.70, Q.72, Y.86, V.88, I.102, F.104, Y.137, A.140, G.141, R.144, F.145, F.148 Chain B: G.65, D.66, F.67 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:I.102, A:F.104, A:Y.137, A:A.140 Hydrogen bonds: A:Q.72, A:Y.86, B:D.66 pi-Stacking: A:F.104 EMU.4: 16 residues within 4Å: Chain A: G.65, D.66, F.67 Chain B: L.61, T.70, Q.72, Y.86, V.88, I.102, F.104, Y.137, A.140, G.141, R.144, F.145, F.148 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:I.102, B:F.104, B:Y.137, B:A.140 Hydrogen bonds: B:Q.72, B:Y.86, B:Y.86, A:D.66 pi-Stacking: B:F.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruszkowski, M. et al., The landscape of cytokinin binding by a plant nodulin. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-12-04

Peptides

MtN13 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

MtN13 protein