SMTL ID : 4jht.1

Crystal Structure of AlkB in complex with 5-carboxy-8-hydroxyquinoline (IOX1)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.18 Å

Oligo State

monomer

Ligands

1 x 8XQ: 8-hydroxyquinoline-5-carboxylic acid(Non-covalent)

8XQ.1: 15 residues within 4Å: Chain A: Y.112, L.118, H.121, D.123, S.135, F.144, L.160, W.168, H.177, I.179, R.194, N.196, T.198 Ligands: MN.2, ACT.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.118, A:F.144, A:I.179, A:T.198 Hydrogen bonds: A:S.135 Water bridges: A:V.166, A:R.200 Salt bridges: A:R.194

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: H.121, D.123, H.177 Ligands: 8XQ.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.121, A:D.123, A:H.177, H2O.6

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 5 residues within 4Å: Chain A: Y.112, I.179, R.194, N.196 Ligands: 8XQ.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.112 Salt bridges: A:R.194

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 2 residues within 4Å: Chain A: M.47, S.119 3 PLIP interactions: 3 interactions with chain A Water bridges: A:S.48, A:S.48, A:S.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hopkinson, R.J. et al., 5-Carboxy-8-hydroxyquinoline is a Broad Spectrum 2-Oxoglutarate Oxygenase Inhibitor which Causes Iron Translocation. Chem Sci (2013)

Release Date

2013-06-26

Peptides

Alpha-ketoglutarate-dependent dioxygenase AlkB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-ketoglutarate-dependent dioxygenase AlkB

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