SMTL ID : 4jhz.1 (1 other biounit)

Structure of E. coli beta-Glucuronidase bound with a novel, potent inhibitor 2-[4-(1,3-benzodioxol-5-ylmethyl)piperazin-1-yl]-N-[(1S,2S,5S)-2,5-dimethoxycyclohexyl]acetamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.83 Å

Oligo State

homo-dimer

Ligands

2 x 1KV: 2-[4-(1,3-benzodioxol-5-ylmethyl)piperazin-1-yl]-N-[(1S,2S,5S)-2,5-dimethoxycyclohexyl]acetamide(Non-covalent)

1KV.1: 10 residues within 4Å: Chain A: H.164, D.165, L.363, E.415, V.448, M.449, Y.470, Y.474, V.475, R.564 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:D.165, A:Y.474 Water bridges: A:D.165 Salt bridges: A:E.415, A:E.415 1KV.2: 9 residues within 4Å: Chain B: H.164, D.165, L.363, E.415, V.448, M.449, Y.470, Y.474, R.564 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:D.165, B:Y.474 Salt bridges: B:E.415, B:E.415

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roberts, A.B. et al., Molecular Insights into Microbial beta-Glucuronidase Inhibition to Abrogate CPT-11 Toxicity. Mol.Pharmacol. (2013)

Release Date

2013-08-28

Peptides

Beta-glucuronidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta-glucuronidase

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