SMTL ID : 4jie.1

Structural analysis and insights into glycon specificity of the rice GH1 Os7BGlu26 beta-D-mannosidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: R.302, Y.303, L.308, T.317, F.318 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.303, A:F.318, A:F.318 GOL.2: 4 residues within 4Å: Chain A: K.146, K.192, D.193, R.260 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.146, A:K.146, A:D.193, A:R.260 GOL.3: 9 residues within 4Å: Chain A: R.201, V.268, Y.270, H.290, F.341, Q.357, W.360, F.364 Ligands: EPE.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.270, A:Q.357 Water bridges: A:R.201, A:R.201 GOL.4: 4 residues within 4Å: Chain A: N.378, S.379, Y.380, L.466 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.378, A:Y.380 Water bridges: A:N.378 GOL.5: 7 residues within 4Å: Chain A: Q.284, D.288, D.296, R.302, P.304, Y.305, S.306 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Q.284, A:D.288, A:R.302, A:R.302, A:Y.305, A:S.306 Water bridges: A:D.288, A:D.288, A:P.304, A:S.306 GOL.6: 4 residues within 4Å: Chain A: E.271, R.368, W.387, K.391 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.271, A:R.368, A:W.387, A:K.391, A:K.391

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.7: 7 residues within 4Å: Chain A: E.199, C.202, L.206, Y.380, W.381 Ligands: GOL.3, BMA.8 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.463 Water bridges: A:Y.154, A:R.201, A:N.210 Salt bridges: A:E.199 pi-Cation interactions: A:W.381

1 x BMA: beta-D-mannopyranose(Non-covalent)

BMA.8: 13 residues within 4Å: Chain A: Q.52, H.153, Y.154, N.198, E.199, Y.338, W.381, E.409, W.456, E.463, W.464, F.472 Ligands: EPE.7 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Q.52, A:H.153, A:Y.154, A:Y.154, A:N.198, A:E.409, A:W.464 Water bridges: A:S.379, A:S.379, A:N.461

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tankrathok, A. et al., Structural analysis and insights into the glycon specificity of the rice GH1 Os7BGlu26 beta-D-mannosidase. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-10-09

Peptides

Beta-mannosidase/beta-glucosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-mannosidase/beta-glucosidase

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