SMTL ID : 4jj2.1

High resolution structure of a C-terminal fragment of the T4 phage gp5 beta-helix

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.28 Å

Oligo State

homo-trimer

Ligands

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x ELA: 9-OCTADECENOIC ACID(Non-covalent)

ELA.2: 13 residues within 4Å: Chain A: E.6, I.24, I.32 Chain B: K.8, G.14, T.15, I.32, T.40 Chain C: I.16, V.18, V.22, I.24, V.42 7 PLIP interactions: 4 interactions with chain C, 1 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: C:I.16, C:V.18, C:V.22, C:I.24, B:I.32, A:I.24, A:I.32

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.3: 10 residues within 4Å: Chain A: I.16, I.24, T.40 Chain B: E.6, K.8, I.24, I.32 Chain C: T.15, I.32, T.40 6 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: B:E.6, B:K.8, B:I.32, A:I.16, C:I.32 Water bridges: A:Q.46

1 x STE: STEARIC ACID(Non-covalent)

STE.4: 14 residues within 4Å: Chain A: G.14, T.15, I.16, I.32, V.34, A.38 Chain B: I.16, V.22, I.24, V.42, Q.46 Chain C: E.6, I.24, I.32 11 PLIP interactions: 5 interactions with chain B, 3 interactions with chain C, 3 interactions with chain A Hydrophobic interactions: B:I.16, B:V.22, B:I.24, C:E.6, C:I.24, C:I.32, A:I.16, A:V.34, A:A.38 Water bridges: B:T.40, B:T.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buth, S.A. et al., Structure and Biophysical Properties of a Triple-Stranded Beta-Helix Comprising the Central Spike of Bacteriophage T4. Viruses (2015)

Release Date

2014-03-12

Peptides

Tail-associated lysozyme: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Tail-associated lysozyme