SMTL ID : 4jkb.1 (1 other biounit)

Open and closed forms of V1788D human PRP8 RNase H-like domain with bound Mg ion

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: E.143, P.144 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.143 GOL.2: 4 residues within 4Å: Chain A: Q.48, F.50, L.84, E.88 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.48 Water bridges: A:Q.48

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: K.70, R.97, G.99 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: R.97, K.98 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: R.173, H.176 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schellenberg, M.J. et al., A conformational switch in PRP8 mediates metal ion coordination that promotes pre-mRNA exon ligation. Nat.Struct.Mol.Biol. (2013)

Release Date

2013-05-22

Peptides

Pre-mRNA-processing-splicing factor 8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Pre-mRNA-processing-splicing factor 8

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