SMTL ID : 4jkj.3 (3 other biounits)

Crystal Structure of the S18Y Variant of Ubiquitin Carboxy-terminal Hydrolase L1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-tetramer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: Q.89, G.92, N.93, S.94, C.95, R.183 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.89, A:Q.89, A:N.93, A:S.94, A:C.95, A:R.183 SO4.2: 2 residues within 4Å: Chain A: V.173, D.174 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.174 Salt bridges: A:K.83 SO4.3: 6 residues within 4Å: Chain B: Q.89, G.92, N.93, S.94, C.95, R.183 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.89, B:Q.89, B:N.93, B:S.94, B:C.95, B:R.183 SO4.4: 2 residues within 4Å: Chain B: V.173, D.174 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.174 Salt bridges: B:K.83 SO4.5: 6 residues within 4Å: Chain C: Q.89, G.92, N.93, S.94, C.95, R.183 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:Q.89, C:Q.89, C:N.93, C:S.94, C:C.95, C:R.183 SO4.6: 2 residues within 4Å: Chain C: V.173, D.174 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.174 Salt bridges: C:K.83 SO4.7: 6 residues within 4Å: Chain D: Q.89, G.92, N.93, S.94, C.95, R.183 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:Q.89, D:Q.89, D:N.93, D:S.94, D:C.95, D:R.183 SO4.8: 2 residues within 4Å: Chain D: V.173, D.174 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:D.174 Salt bridges: D:K.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davies, C.W. et al., Crystal Structure of the S18Y Variant of Ubiquitin Carboxy-terminal Hydrolase L1. To be Published

Release Date

2014-05-28

Peptides

Ubiquitin carboxyl-terminal hydrolase isozyme L1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Ubiquitin carboxyl-terminal hydrolase isozyme L1

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