SMTL ID : 4jnn.1

Crystal structure of a putative transcriptional regulator from Saccharomonospora viridis in complex with benzamidine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.1: 8 residues within 4Å: Chain A: Q.87, W.98, W.101, Y.118, A.121, Y.122, W.125, D.159 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.118, A:W.125, A:W.125 Hydrogen bonds: A:Q.87, A:Y.118, A:D.159 pi-Stacking: A:W.101 BEN.3: 8 residues within 4Å: Chain B: Q.87, W.98, W.101, Y.118, A.121, Y.122, W.125, D.159 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Y.118, B:W.125, B:W.125 Hydrogen bonds: B:Q.87, B:D.159 pi-Stacking: B:W.101

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 9 residues within 4Å: Chain A: L.161, Q.164, V.165, K.169, C.172, S.173, H.176, M.177 Chain B: T.152 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.173, A:S.173, A:H.176 BME.4: 9 residues within 4Å: Chain A: T.152 Chain B: L.161, Q.164, V.165, K.169, C.172, S.173, H.176, M.177 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.173, B:S.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Filippova, E.V. et al., Crystal structure of a putative transcriptional regulator from Saccharomonospora viridis in complex with benzamidine. To be Published

Release Date

2013-04-10

Peptides

Transcriptional regulator: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Transcriptional regulator