SMTL ID : 4jnt.1

Crystal structure of the ectodomain of Bovine viral diarrhea virus 1 E2 envelope protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 4.09 Å

Oligo State

homo-dimer

Ligands

8 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.117, W.187 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain A: V.129, C.130, G.167, I.169, N.186 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain A: K.198, N.230, E.231 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.198, A:K.198 NAG-NAG.4: 3 residues within 4Å: Chain A: S.285, N.298, W.327 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 1 residues within 4Å: Chain B: N.117 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 5 residues within 4Å: Chain B: C.130, Q.166, G.167, I.169, N.186 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.166 NAG-NAG.7: 5 residues within 4Å: Chain B: Q.171, K.198, N.230, E.231, R.235 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.198, B:K.198 NAG-NAG.8: 2 residues within 4Å: Chain B: N.298, W.327 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Crystal structure of glycoprotein E2 from bovine viral diarrhea virus. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-04-17

Peptides

Envelope glycoprotein E2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Envelope glycoprotein E2