SMTL ID : 4jp5.1

X-ray structure of uridine phosphorylase from Yersinia pseudotuberculosis in unliganded state at 2.27 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

homo-hexamer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 11 residues within 4Å: Chain A: A.113, R.115, M.126, E.127, F.128, P.129, A.130 Chain B: M.126, E.127, F.128, P.129 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:A.113, A:E.127, A:A.130 Water bridges: B:A.130 EDO.5: 5 residues within 4Å: Chain E: E.127 Chain F: L.116, H.179, F.180, W.187 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.178 EDO.6: 2 residues within 4Å: Chain E: G.210 Chain F: G.191 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain C: Q.17, E.56 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.17, C:Q.17

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: R.48 Chain E: P.28, R.48 No protein-ligand interaction detected (PLIP) GOL.4: 3 residues within 4Å: Chain E: N.103, Q.225, E.227 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:N.103, E:Q.225 Water bridges: E:Q.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Balaev, V.V. et al., X-ray structure of uridine phosphorylase from Yersinia pseudotuberculosis in unliganded state at 2.27 A resolution. To be Published

Release Date

2014-04-09

Peptides

Uridine phosphorylase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Uridine phosphorylase

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