SMTL ID : 4jpi.1 (1 other biounit)

Crystal structure of a putative VRC01 germline precursor Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: P.41, E.156, A.176, Y.184 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.176 Water bridges: A:Y.184 GOL.2: 3 residues within 4Å: Chain A: K.100, N.101 Chain B: Y.49 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.101, A:N.101, B:Y.49 Water bridges: A:R.98 GOL.3: 2 residues within 4Å: Chain A: W.106 Chain B: Y.91 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jardine, J. et al., Rational HIV immunogen design to target specific germline B cell receptors. Science (2013)

Release Date

2013-04-10

Peptides

Putative VRC01 germline Fab heavy chain: A
Putative VRC01 germline Fab light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

Putative VRC01 germline Fab heavy chain

Putative VRC01 germline Fab light chain

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