SMTL ID : 4jpj.2 (3 other biounits)

Crystal structure of the germline-targeting HIV-1 gp120 engineered outer domain, eOD-GT6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.18, S.94, E.96 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.94 NAG.2: 5 residues within 4Å: Chain A: H.14, S.16, S.17, V.57, N.65 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.57 Hydrogen bonds: A:H.14, A:S.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jardine, J. et al., Rational HIV immunogen design to target specific germline B cell receptors. Science (2013)

Release Date

2013-04-10

Peptides

Germline-targeting HIV-1 gp120 engineered outer domain, eOD-GT6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Germline-targeting HIV-1 gp120 engineered outer domain, eOD-GT6

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