SMTL ID : 4jq2.1 (1 other biounit)

AKR1C2 complex with sulindac

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x SUZ: [(1Z)-5-fluoro-2-methyl-1-{4-[methylsulfinyl]benzylidene}-1H-inden-3-yl]acetic acid(Non-covalent)

SUZ.1: 11 residues within 4Å: Chain A: Y.24, V.54, Y.55, W.86, H.117, I.129, H.222, E.224, W.227, L.306 Ligands: NAP.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.54, A:W.86, A:I.129, A:I.129, A:W.227, A:W.227, A:L.306 Hydrogen bonds: A:Y.55 Salt bridges: A:K.84, A:H.117

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 30 residues within 4Å: Chain A: G.22, T.23, Y.24, D.50, Y.55, K.84, H.117, S.166, N.167, Q.190, Y.216, S.217, A.218, L.219, G.220, S.221, H.222, L.236, A.253, L.268, A.269, K.270, S.271, Y.272, N.273, R.276, Q.279, N.280, L.306 Ligands: SUZ.1 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:L.306 Hydrogen bonds: A:T.23, A:Y.24, A:D.50, A:S.166, A:N.167, A:Q.190, A:S.217, A:L.219, A:S.221, A:H.222, A:K.270, A:Y.272, A:Q.279, A:N.280 Water bridges: A:A.218, A:A.218 Salt bridges: A:H.222, A:K.270, A:R.276 pi-Stacking: A:Y.216 pi-Cation interactions: A:R.276

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 10 residues within 4Å: Chain A: Y.5, Q.6, P.17, V.18, L.19, G.45, F.46, H.47, H.48, F.284 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.6, A:Q.6, A:V.18, A:L.19, A:H.47, A:H.48 EDO.4: 3 residues within 4Å: Chain A: H.248, R.250, F.286 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.248, A:R.250, A:R.250

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.5: 4 residues within 4Å: Chain A: K.207, Q.262, R.263, M.293 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.200, A:R.200, A:R.200, A:K.207 Salt bridges: A:R.200, A:K.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yosaatmadja, Y. et al., Structural basis of NSAID selectivity for the aldo-keto reductase 1C family. To be Published

Release Date

2014-04-02

Peptides

Aldo-keto reductase family 1 member C2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aldo-keto reductase family 1 member C2

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