- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.17 Å
- Oligo State
- homo-dimer
- Ligands
- 7 x SO4: SULFATE ION(Non-functional Binders)
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 8 residues within 4Å:- Chain A: L.57, H.58, K.61, Y.352, T.353, E.354, E.356
- Chain B: R.386
5 PLIP interactions:1 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:R.386, A:T.353, A:E.356, A:E.356
- Water bridges: A:K.61
GOL.14: 9 residues within 4Å:- Chain A: R.386
- Chain B: K.54, L.57, H.58, K.61, Y.352, T.353, E.354, E.356
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:E.354, B:E.356, A:R.386
GOL.15: 7 residues within 4Å:- Chain A: Y.19, I.51
- Chain B: A.383, S.384, G.385, H.445, D.465
7 PLIP interactions:5 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:G.385
- Water bridges: B:S.384, B:H.445, B:E.450, B:E.450, A:Y.19, A:L.46
- 2 x IMD: IMIDAZOLE(Non-covalent)
IMD.4: 5 residues within 4Å:- Chain A: Y.38, G.43, V.44, N.47
- Ligands: FAD.10
1 PLIP interactions:1 interactions with chain A- pi-Stacking: A:Y.38
IMD.16: 5 residues within 4Å:- Chain B: Y.38, G.43, V.44, N.47
- Ligands: FAD.21
3 PLIP interactions:3 interactions with chain B- Water bridges: B:G.43, B:N.47
- pi-Stacking: B:Y.38
- 7 x CL: CHLORIDE ION(Non-functional Binders)
CL.5: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.6: 1 residues within 4Å:- Chain A: G.283
Ligand excluded by PLIPCL.7: 2 residues within 4Å:- Chain A: P.306, H.307
Ligand excluded by PLIPCL.8: 1 residues within 4Å:- Chain A: R.263
Ligand excluded by PLIPCL.17: 2 residues within 4Å:- Chain B: D.298, K.299
Ligand excluded by PLIPCL.18: 4 residues within 4Å:- Chain B: R.292, R.296, G.316, Q.317
Ligand excluded by PLIPCL.19: 4 residues within 4Å:- Chain B: G.121, A.122, N.123, T.124
Ligand excluded by PLIP- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.10: 39 residues within 4Å:- Chain A: L.12, G.13, A.14, G.15, P.16, A.17, G.18, E.36, R.37, Y.38, G.43, V.44, C.45, V.48, G.49, C.50, S.53, K.54, G.115, L.116, G.117, A.144, A.145, G.146, S.147, S.165, I.186, R.273, L.280, G.312, D.313, M.319, L.320, A.321, H.322, Y.352
- Chain B: H.445, P.446
- Ligands: IMD.4
28 PLIP interactions:27 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:V.44, A:I.186, A:I.186
- Hydrogen bonds: A:A.14, A:G.15, A:A.17, A:G.18, A:R.37, A:R.37, A:V.44, A:C.45, A:K.54, A:G.117, A:G.117, A:S.147, A:D.313, A:M.319, A:A.321, A:H.322, B:H.445
- Water bridges: A:R.37, A:G.43, A:G.146, A:G.312, A:D.313, A:I.314, A:K.323
- pi-Cation interactions: A:R.37
FAD.21: 36 residues within 4Å:- Chain A: H.445, P.446
- Chain B: L.12, G.13, G.15, P.16, A.17, G.18, E.36, R.37, Y.38, G.43, V.44, C.45, V.48, G.49, C.50, K.54, G.115, L.116, G.117, A.144, A.145, G.146, S.165, I.186, R.273, L.280, G.312, D.313, M.319, L.320, A.321, H.322, Y.352
- Ligands: IMD.16
29 PLIP interactions:26 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:V.44, B:I.186, B:I.186
- Hydrogen bonds: B:A.14, B:G.15, B:A.17, B:G.18, B:R.37, B:R.37, B:V.44, B:C.45, B:K.54, B:G.117, B:G.117, B:S.147, B:D.313, B:M.319, B:A.321, B:H.322, A:H.445
- Water bridges: B:A.14, B:R.37, B:G.43, B:G.146, B:I.314, B:G.324, A:H.445, A:H.445
- pi-Cation interactions: B:R.37
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tietzel, M. et al., Dihydrolipoyl dehydrogenase of Escherichia coli pyruvate dehydrogenase complex. TO BE PUBLISHED
- Release Date
- 2014-04-02
- Peptides
- Dihydrolipoyl dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.17 Å
- Oligo State
- homo-dimer
- Ligands
- 7 x SO4: SULFATE ION(Non-functional Binders)
- 3 x GOL: GLYCEROL(Non-functional Binders)
- 2 x IMD: IMIDAZOLE(Non-covalent)
- 7 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tietzel, M. et al., Dihydrolipoyl dehydrogenase of Escherichia coli pyruvate dehydrogenase complex. TO BE PUBLISHED
- Release Date
- 2014-04-02
- Peptides
- Dihydrolipoyl dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
E