SMTL ID : 4jrb.1

Structure of Cockroach Allergen Bla g 1 Tandem Repeat as a EGFP fusion

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

monomer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: K.108, E.125 Ligand excluded by PLIP CL.2: 1 residues within 4Å: Chain A: Y.183 Ligand excluded by PLIP

1 x PGT: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE(Non-covalent)

PGT.3: 9 residues within 4Å: Chain A: I.373, F.378, Q.379, V.382, L.385, I.412, R.413, F.416 Ligands: D12.7 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.373, A:I.373, A:F.378, A:V.382, A:V.382, A:L.385, A:I.412 Hydrogen bonds: A:Q.379

6 x D12: DODECANE(Non-covalent)(Non-functional Binders)

D12.4: 4 residues within 4Å: Chain A: L.352, F.356, L.415 Ligands: D12.5 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.352, A:F.356, A:L.415 D12.5: 5 residues within 4Å: Chain A: F.366, L.369, I.373, F.416 Ligands: D12.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.366, A:L.369, A:I.373 D12.6: 6 residues within 4Å: Chain A: V.282, L.285, D.286, L.291, L.309, Y.391 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.282, A:D.286, A:L.291, A:L.309, A:Y.391 D12.7: 1 residues within 4Å: Ligands: PGT.3 No protein-ligand interaction detected (PLIP) D12.8: 1 residues within 4Å: Chain A: V.249 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.249 D12.9: 2 residues within 4Å: Chain A: I.253, V.343 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.253, A:V.343

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mueller, G.A. et al., The novel structure of the cockroach allergen Bla g 1 has implications for allergenicity and exposure assessment. J.Allergy Clin.Immunol. (2013)

Release Date

2013-07-24

Peptides

Green fluorescent protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Green fluorescent protein