SMTL ID : 4js2.1

Crystal structure of human Beta-galactoside alpha-2,6-sialyltransferase 1 in complex with CMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- NAG- GAL- MAN- NAG- GAL- FUL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-GAL-FUL.1: 3 residues within 4Å: Chain A: H.59, N.61, E.215 No protein-ligand interaction detected (PLIP)

1 x C5P: CYTIDINE-5'-MONOPHOSPHATE(Non-covalent)

C5P.2: 15 residues within 4Å: Chain A: S.100, S.101, A.102, F.123, N.124, S.234, S.235, G.236, F.255, C.265, Y.266, C.276, T.277, L.284, K.288 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:S.101, A:S.101, A:N.124, A:S.234, A:S.234, A:S.235, A:G.236, A:T.277, A:T.277, A:K.288 Water bridges: A:S.104, A:N.145, A:T.277

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuhn, B. et al., The structure of human alpha-2,6-sialyltransferase reveals the binding mode of complex glycans. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-07-31

Peptides

Beta-galactoside alpha-2,6-sialyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-galactoside alpha-2,6-sialyltransferase 1

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