- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.54 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 16 x K: POTASSIUM ION(Non-covalent)
K.2: 15 residues within 4Å:- Chain B: G.391, Y.392
- Chain D: G.391, Y.392
- Chain F: G.391, Y.392
- Chain H: G.391, Y.392
- Ligands: K.3, K.23, K.24, K.44, K.45, K.65, K.66
Ligand excluded by PLIPK.3: 19 residues within 4Å:- Chain B: V.390, G.391
- Chain D: V.390, G.391
- Chain F: V.390, G.391
- Chain H: V.390, G.391
- Ligands: K.2, K.4, K.23, K.24, K.25, K.44, K.45, K.46, K.65, K.66, K.67
Ligand excluded by PLIPK.4: 19 residues within 4Å:- Chain B: T.389, V.390
- Chain D: T.389, V.390
- Chain F: T.389, V.390
- Chain H: T.389, V.390
- Ligands: K.3, K.5, K.24, K.25, K.26, K.45, K.46, K.47, K.66, K.67, K.68
Ligand excluded by PLIPK.5: 11 residues within 4Å:- Chain B: T.389
- Chain D: T.389
- Chain F: T.389
- Chain H: T.389
- Ligands: K.4, K.25, K.26, K.46, K.47, K.67, K.68
Ligand excluded by PLIPK.23: 15 residues within 4Å:- Chain B: G.391, Y.392
- Chain D: G.391, Y.392
- Chain F: G.391, Y.392
- Chain H: G.391, Y.392
- Ligands: K.2, K.3, K.24, K.44, K.45, K.65, K.66
Ligand excluded by PLIPK.24: 19 residues within 4Å:- Chain B: V.390, G.391
- Chain D: V.390, G.391
- Chain F: V.390, G.391
- Chain H: V.390, G.391
- Ligands: K.2, K.3, K.4, K.23, K.25, K.44, K.45, K.46, K.65, K.66, K.67
Ligand excluded by PLIPK.25: 19 residues within 4Å:- Chain B: T.389, V.390
- Chain D: T.389, V.390
- Chain F: T.389, V.390
- Chain H: T.389, V.390
- Ligands: K.3, K.4, K.5, K.24, K.26, K.45, K.46, K.47, K.66, K.67, K.68
Ligand excluded by PLIPK.26: 11 residues within 4Å:- Chain B: T.389
- Chain D: T.389
- Chain F: T.389
- Chain H: T.389
- Ligands: K.4, K.5, K.25, K.46, K.47, K.67, K.68
Ligand excluded by PLIPK.44: 15 residues within 4Å:- Chain B: G.391, Y.392
- Chain D: G.391, Y.392
- Chain F: G.391, Y.392
- Chain H: G.391, Y.392
- Ligands: K.2, K.3, K.23, K.24, K.45, K.65, K.66
Ligand excluded by PLIPK.45: 19 residues within 4Å:- Chain B: V.390, G.391
- Chain D: V.390, G.391
- Chain F: V.390, G.391
- Chain H: V.390, G.391
- Ligands: K.2, K.3, K.4, K.23, K.24, K.25, K.44, K.46, K.65, K.66, K.67
Ligand excluded by PLIPK.46: 19 residues within 4Å:- Chain B: T.389, V.390
- Chain D: T.389, V.390
- Chain F: T.389, V.390
- Chain H: T.389, V.390
- Ligands: K.3, K.4, K.5, K.24, K.25, K.26, K.45, K.47, K.66, K.67, K.68
Ligand excluded by PLIPK.47: 11 residues within 4Å:- Chain B: T.389
- Chain D: T.389
- Chain F: T.389
- Chain H: T.389
- Ligands: K.4, K.5, K.25, K.26, K.46, K.67, K.68
Ligand excluded by PLIPK.65: 15 residues within 4Å:- Chain B: G.391, Y.392
- Chain D: G.391, Y.392
- Chain F: G.391, Y.392
- Chain H: G.391, Y.392
- Ligands: K.2, K.3, K.23, K.24, K.44, K.45, K.66
Ligand excluded by PLIPK.66: 19 residues within 4Å:- Chain B: V.390, G.391
- Chain D: V.390, G.391
- Chain F: V.390, G.391
- Chain H: V.390, G.391
- Ligands: K.2, K.3, K.4, K.23, K.24, K.25, K.44, K.45, K.46, K.65, K.67
Ligand excluded by PLIPK.67: 19 residues within 4Å:- Chain B: T.389, V.390
- Chain D: T.389, V.390
- Chain F: T.389, V.390
- Chain H: T.389, V.390
- Ligands: K.3, K.4, K.5, K.24, K.25, K.26, K.45, K.46, K.47, K.66, K.68
Ligand excluded by PLIPK.68: 11 residues within 4Å:- Chain B: T.389
- Chain D: T.389
- Chain F: T.389
- Chain H: T.389
- Ligands: K.4, K.5, K.25, K.26, K.46, K.47, K.67
Ligand excluded by PLIP- 64 x PGW: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)
PGW.6: 10 residues within 4Å:- Chain B: I.347, P.377, F.380, W.381, V.384
- Chain H: I.400, K.403, S.407
- Ligands: PGW.10, PGW.53
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain H- Hydrophobic interactions: B:I.347, B:F.380, B:V.384
- Hydrogen bonds: H:K.403
PGW.7: 4 residues within 4Å:- Chain B: I.313
- Chain H: A.360, A.364
- Ligands: PGW.8
3 PLIP interactions:2 interactions with chain H, 1 interactions with chain B- Hydrophobic interactions: H:A.360, H:A.364, B:I.313
PGW.8: 2 residues within 4Å:- Chain H: G.401
- Ligands: PGW.7
No protein-ligand interaction detected (PLIP)PGW.9: 1 residues within 4Å:- Chain B: I.310
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:I.310
PGW.10: 2 residues within 4Å:- Chain H: I.404
- Ligands: PGW.6
1 PLIP interactions:1 interactions with chain H- Hydrophobic interactions: H:I.404
PGW.11: 4 residues within 4Å:- Chain B: V.197
- Chain H: P.377, F.380
- Ligands: PGW.69
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain H- Hydrophobic interactions: B:V.197, H:P.377, H:F.380
PGW.12: 4 residues within 4Å:- Chain B: I.347
- Chain H: T.416
- Ligands: PGW.13, PGW.17
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:I.347
PGW.13: 4 residues within 4Å:- Chain B: M.340, G.344
- Ligands: PGW.12, PGW.58
No protein-ligand interaction detected (PLIP)PGW.14: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)PGW.15: 3 residues within 4Å:- Chain B: I.194, P.240, F.241
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:I.194, B:P.240, B:F.241, B:F.241
PGW.16: 12 residues within 4Å:- Chain B: V.189, L.322, H.325, S.326, K.327, G.328
- Chain H: R.341, G.344, L.345, I.347, F.348
- Ligands: PGW.76
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain H- Hydrophobic interactions: B:V.189, H:I.347, H:F.348
- Hydrogen bonds: B:K.327, B:G.328
- Salt bridges: H:R.341
PGW.17: 4 residues within 4Å:- Chain B: L.332
- Chain H: F.349, L.356
- Ligands: PGW.12
2 PLIP interactions:1 interactions with chain H, 1 interactions with chain B- Hydrophobic interactions: H:L.356, B:L.332
PGW.18: 12 residues within 4Å:- Chain B: I.273, M.274, F.320, S.323, K.327, L.329, Q.330, G.333, Q.334, K.337, R.434, E.435
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:I.273, B:I.273, B:F.320, B:Q.330, B:K.337, B:K.337
- Hydrogen bonds: B:K.327, B:Q.334, B:R.434, B:R.434, B:R.434
- Salt bridges: B:K.327
PGW.19: 2 residues within 4Å:- Chain B: Y.285, E.293
No protein-ligand interaction detected (PLIP)PGW.20: 2 residues within 4Å:- Chain B: I.276, I.283
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:I.276
PGW.21: 2 residues within 4Å:- Chain B: F.237, L.247
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:F.237, B:L.247
PGW.27: 10 residues within 4Å:- Chain D: I.347, P.377, F.380, W.381, V.384
- Chain F: I.400, K.403, S.407
- Ligands: PGW.31, PGW.74
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain F- Hydrophobic interactions: D:I.347, D:F.380, D:V.384
- Hydrogen bonds: F:K.403
PGW.28: 4 residues within 4Å:- Chain D: I.313
- Chain F: A.360, A.364
- Ligands: PGW.29
3 PLIP interactions:2 interactions with chain F, 1 interactions with chain D- Hydrophobic interactions: F:A.360, F:A.364, D:I.313
PGW.29: 2 residues within 4Å:- Chain F: G.401
- Ligands: PGW.28
No protein-ligand interaction detected (PLIP)PGW.30: 1 residues within 4Å:- Chain D: I.310
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:I.310
PGW.31: 2 residues within 4Å:- Chain F: I.404
- Ligands: PGW.27
1 PLIP interactions:1 interactions with chain F- Hydrophobic interactions: F:I.404
PGW.32: 4 residues within 4Å:- Chain D: V.197
- Chain F: P.377, F.380
- Ligands: PGW.48
3 PLIP interactions:2 interactions with chain F, 1 interactions with chain D- Hydrophobic interactions: F:P.377, F:F.380, D:V.197
PGW.33: 4 residues within 4Å:- Chain D: I.347
- Chain F: T.416
- Ligands: PGW.34, PGW.38
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:I.347
PGW.34: 4 residues within 4Å:- Chain D: M.340, G.344
- Ligands: PGW.33, PGW.79
No protein-ligand interaction detected (PLIP)PGW.35: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)PGW.36: 3 residues within 4Å:- Chain D: I.194, P.240, F.241
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:I.194, D:P.240, D:F.241, D:F.241
PGW.37: 12 residues within 4Å:- Chain D: V.189, L.322, H.325, S.326, K.327, G.328
- Chain F: R.341, G.344, L.345, I.347, F.348
- Ligands: PGW.55
6 PLIP interactions:3 interactions with chain D, 3 interactions with chain F- Hydrophobic interactions: D:V.189, F:I.347, F:F.348
- Hydrogen bonds: D:K.327, D:G.328
- Salt bridges: F:R.341
PGW.38: 4 residues within 4Å:- Chain D: L.332
- Chain F: F.349, L.356
- Ligands: PGW.33
2 PLIP interactions:1 interactions with chain F, 1 interactions with chain D- Hydrophobic interactions: F:L.356, D:L.332
PGW.39: 12 residues within 4Å:- Chain D: I.273, M.274, F.320, S.323, K.327, L.329, Q.330, G.333, Q.334, K.337, R.434, E.435
12 PLIP interactions:12 interactions with chain D- Hydrophobic interactions: D:I.273, D:I.273, D:F.320, D:Q.330, D:K.337, D:K.337
- Hydrogen bonds: D:K.327, D:Q.334, D:R.434, D:R.434, D:R.434
- Salt bridges: D:K.327
PGW.40: 2 residues within 4Å:- Chain D: Y.285, E.293
No protein-ligand interaction detected (PLIP)PGW.41: 2 residues within 4Å:- Chain D: I.276, I.283
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:I.276
PGW.42: 2 residues within 4Å:- Chain D: F.237, L.247
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:F.237, D:L.247
PGW.48: 10 residues within 4Å:- Chain B: I.400, K.403, S.407
- Chain F: I.347, P.377, F.380, W.381, V.384
- Ligands: PGW.32, PGW.52
4 PLIP interactions:3 interactions with chain F, 1 interactions with chain B- Hydrophobic interactions: F:I.347, F:F.380, F:V.384
- Hydrogen bonds: B:K.403
PGW.49: 4 residues within 4Å:- Chain B: A.360, A.364
- Chain F: I.313
- Ligands: PGW.50
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain F- Hydrophobic interactions: B:A.360, B:A.364, F:I.313
PGW.50: 2 residues within 4Å:- Chain B: G.401
- Ligands: PGW.49
No protein-ligand interaction detected (PLIP)PGW.51: 1 residues within 4Å:- Chain F: I.310
1 PLIP interactions:1 interactions with chain F- Hydrophobic interactions: F:I.310
PGW.52: 2 residues within 4Å:- Chain B: I.404
- Ligands: PGW.48
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:I.404
PGW.53: 4 residues within 4Å:- Chain B: P.377, F.380
- Chain F: V.197
- Ligands: PGW.6
3 PLIP interactions:1 interactions with chain F, 2 interactions with chain B- Hydrophobic interactions: F:V.197, B:P.377, B:F.380
PGW.54: 4 residues within 4Å:- Chain B: T.416
- Chain F: I.347
- Ligands: PGW.55, PGW.59
1 PLIP interactions:1 interactions with chain F- Hydrophobic interactions: F:I.347
PGW.55: 4 residues within 4Å:- Chain F: M.340, G.344
- Ligands: PGW.37, PGW.54
No protein-ligand interaction detected (PLIP)PGW.56: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)PGW.57: 3 residues within 4Å:- Chain F: I.194, P.240, F.241
4 PLIP interactions:4 interactions with chain F- Hydrophobic interactions: F:I.194, F:P.240, F:F.241, F:F.241
PGW.58: 12 residues within 4Å:- Chain B: R.341, G.344, L.345, I.347, F.348
- Chain F: V.189, L.322, H.325, S.326, K.327, G.328
- Ligands: PGW.13
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain F- Hydrophobic interactions: B:I.347, B:F.348, F:V.189
- Salt bridges: B:R.341
- Hydrogen bonds: F:K.327, F:G.328
PGW.59: 4 residues within 4Å:- Chain B: F.349, L.356
- Chain F: L.332
- Ligands: PGW.54
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain F- Hydrophobic interactions: B:L.356, F:L.332
PGW.60: 12 residues within 4Å:- Chain F: I.273, M.274, F.320, S.323, K.327, L.329, Q.330, G.333, Q.334, K.337, R.434, E.435
12 PLIP interactions:12 interactions with chain F- Hydrophobic interactions: F:I.273, F:I.273, F:F.320, F:Q.330, F:K.337, F:K.337
- Hydrogen bonds: F:K.327, F:Q.334, F:R.434, F:R.434, F:R.434
- Salt bridges: F:K.327
PGW.61: 2 residues within 4Å:- Chain F: Y.285, E.293
No protein-ligand interaction detected (PLIP)PGW.62: 2 residues within 4Å:- Chain F: I.276, I.283
1 PLIP interactions:1 interactions with chain F- Hydrophobic interactions: F:I.276
PGW.63: 2 residues within 4Å:- Chain F: F.237, L.247
2 PLIP interactions:2 interactions with chain F- Hydrophobic interactions: F:F.237, F:L.247
PGW.69: 10 residues within 4Å:- Chain D: I.400, K.403, S.407
- Chain H: I.347, P.377, F.380, W.381, V.384
- Ligands: PGW.11, PGW.73
4 PLIP interactions:3 interactions with chain H, 1 interactions with chain D- Hydrophobic interactions: H:I.347, H:F.380, H:V.384
- Hydrogen bonds: D:K.403
PGW.70: 4 residues within 4Å:- Chain D: A.360, A.364
- Chain H: I.313
- Ligands: PGW.71
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain H- Hydrophobic interactions: D:A.360, D:A.364, H:I.313
PGW.71: 2 residues within 4Å:- Chain D: G.401
- Ligands: PGW.70
No protein-ligand interaction detected (PLIP)PGW.72: 1 residues within 4Å:- Chain H: I.310
1 PLIP interactions:1 interactions with chain H- Hydrophobic interactions: H:I.310
PGW.73: 2 residues within 4Å:- Chain D: I.404
- Ligands: PGW.69
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:I.404
PGW.74: 4 residues within 4Å:- Chain D: P.377, F.380
- Chain H: V.197
- Ligands: PGW.27
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain H- Hydrophobic interactions: D:P.377, D:F.380, H:V.197
PGW.75: 4 residues within 4Å:- Chain D: T.416
- Chain H: I.347
- Ligands: PGW.76, PGW.80
1 PLIP interactions:1 interactions with chain H- Hydrophobic interactions: H:I.347
PGW.76: 4 residues within 4Å:- Chain H: M.340, G.344
- Ligands: PGW.16, PGW.75
No protein-ligand interaction detected (PLIP)PGW.77: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)PGW.78: 3 residues within 4Å:- Chain H: I.194, P.240, F.241
4 PLIP interactions:4 interactions with chain H- Hydrophobic interactions: H:I.194, H:P.240, H:F.241, H:F.241
PGW.79: 12 residues within 4Å:- Chain D: R.341, G.344, L.345, I.347, F.348
- Chain H: V.189, L.322, H.325, S.326, K.327, G.328
- Ligands: PGW.34
6 PLIP interactions:3 interactions with chain H, 3 interactions with chain D- Hydrophobic interactions: H:V.189, D:I.347, D:F.348
- Hydrogen bonds: H:K.327, H:G.328
- Salt bridges: D:R.341
PGW.80: 4 residues within 4Å:- Chain D: F.349, L.356
- Chain H: L.332
- Ligands: PGW.75
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain H- Hydrophobic interactions: D:L.356, H:L.332
PGW.81: 12 residues within 4Å:- Chain H: I.273, M.274, F.320, S.323, K.327, L.329, Q.330, G.333, Q.334, K.337, R.434, E.435
12 PLIP interactions:12 interactions with chain H- Hydrophobic interactions: H:I.273, H:I.273, H:F.320, H:Q.330, H:K.337, H:K.337
- Hydrogen bonds: H:K.327, H:Q.334, H:R.434, H:R.434, H:R.434
- Salt bridges: H:K.327
PGW.82: 2 residues within 4Å:- Chain H: Y.285, E.293
No protein-ligand interaction detected (PLIP)PGW.83: 2 residues within 4Å:- Chain H: I.276, I.283
1 PLIP interactions:1 interactions with chain H- Hydrophobic interactions: H:I.276
PGW.84: 2 residues within 4Å:- Chain H: F.237, L.247
2 PLIP interactions:2 interactions with chain H- Hydrophobic interactions: H:F.237, H:L.247
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Banerjee, A. et al., Structure of a pore-blocking toxin in complex with a eukaryotic voltage-dependent K(+) channel. Elife (2013)
- Release Date
- 2013-06-12
- Peptides
- Voltage-gated potassium channel subunit beta-2: ACEG
Potassium voltage-gated channel subfamily A member 2, Potassium voltage-gated channel subfamily B member 1: BDFH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AG
AB
BD
BF
BH
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.54 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 16 x K: POTASSIUM ION(Non-covalent)
- 64 x PGW: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Banerjee, A. et al., Structure of a pore-blocking toxin in complex with a eukaryotic voltage-dependent K(+) channel. Elife (2013)
- Release Date
- 2013-06-12
- Peptides
- Voltage-gated potassium channel subunit beta-2: ACEG
Potassium voltage-gated channel subfamily A member 2, Potassium voltage-gated channel subfamily B member 1: BDFH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AG
AB
BD
BF
BH
B - Membrane
-
We predict this structure to be a membrane protein.