- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.2: 4 residues within 4Å:- Chain A: D.428, N.455, T.457
- Ligands: TPP.3
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.428, A:T.457, H2O.1
CA.7: 4 residues within 4Å:- Chain B: D.428, N.455, T.457
- Ligands: TPP.8
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.428, B:T.457, H2O.14
CA.9: 4 residues within 4Å:- Chain C: D.428, N.455, T.457
- Ligands: TPP.10
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.428, C:T.457, H2O.28
CA.11: 4 residues within 4Å:- Chain D: D.428, N.455, T.457
- Ligands: TPP.12
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.428, D:T.457, H2O.41
- 4 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
TPP.3: 25 residues within 4Å:- Chain A: E.375, S.376, T.377, S.378, G.401, G.402, L.403, G.427, D.428, G.429, S.430, Y.433, N.455, T.457, Y.458, G.459, A.460, L.461
- Chain D: N.23, P.24, G.25, E.47, T.70, N.77
- Ligands: CA.2
20 PLIP interactions:18 interactions with chain A, 2 interactions with chain D- Hydrophobic interactions: A:Y.433, A:L.461, D:T.70
- Hydrogen bonds: A:S.376, A:T.377, A:S.378, A:S.378, A:G.401, A:L.403, A:G.427, A:D.428, A:G.429, A:S.430, A:Y.433, A:N.455, A:G.459, A:A.460
- Water bridges: A:D.428, A:N.455, D:E.47
TPP.8: 25 residues within 4Å:- Chain B: E.375, S.376, T.377, S.378, G.401, G.402, L.403, G.427, D.428, G.429, S.430, Y.433, N.455, T.457, Y.458, G.459, A.460, L.461
- Chain C: N.23, P.24, G.25, E.47, T.70, N.77
- Ligands: CA.7
16 PLIP interactions:15 interactions with chain B, 1 interactions with chain C- Hydrophobic interactions: B:Y.433, B:L.461, C:T.70
- Hydrogen bonds: B:S.376, B:T.377, B:T.377, B:S.378, B:G.401, B:L.403, B:G.429, B:S.430, B:N.455, B:G.459, B:A.460
- Water bridges: B:D.428, B:N.455
TPP.10: 25 residues within 4Å:- Chain B: N.23, P.24, G.25, E.47, T.70, N.77
- Chain C: E.375, S.376, T.377, S.378, G.401, G.402, L.403, G.427, D.428, G.429, S.430, Y.433, N.455, T.457, Y.458, G.459, A.460, L.461
- Ligands: CA.9
17 PLIP interactions:15 interactions with chain C, 2 interactions with chain B- Hydrophobic interactions: C:Y.433, C:L.461, B:T.70
- Hydrogen bonds: C:S.376, C:T.377, C:T.377, C:S.378, C:G.401, C:L.403, C:G.429, C:S.430, C:N.455, C:G.459, C:A.460
- Water bridges: C:D.428, C:D.428, B:E.47
TPP.12: 25 residues within 4Å:- Chain A: N.23, P.24, G.25, E.47, T.70, N.77
- Chain D: E.375, S.376, T.377, S.378, G.401, G.402, L.403, G.427, D.428, G.429, S.430, Y.433, N.455, T.457, Y.458, G.459, A.460, L.461
- Ligands: CA.11
17 PLIP interactions:16 interactions with chain D, 1 interactions with chain A- Hydrophobic interactions: D:Y.433, D:L.461, A:T.70
- Hydrogen bonds: D:S.376, D:T.377, D:T.377, D:S.378, D:G.401, D:L.403, D:G.429, D:S.430, D:Y.433, D:N.455, D:G.459, D:A.460
- Water bridges: D:D.428, D:N.455
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brodkin, H.R. et al., Crystal Structure of the His70Thr mutant of Benzoylformate Decarboxylase from Pseudomonas putida. To be Published
- Release Date
- 2013-05-08
- Peptides
- Benzoylformate decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brodkin, H.R. et al., Crystal Structure of the His70Thr mutant of Benzoylformate Decarboxylase from Pseudomonas putida. To be Published
- Release Date
- 2013-05-08
- Peptides
- Benzoylformate decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D