SMTL ID : 4juq.1 (4 other biounits)

Pseudomonas aeruginosa MetAP T2N mutant, in Mn form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

14 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: D.107, H.170, T.201, E.203, E.234 Ligands: MN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.107, A:H.170, A:E.203, A:E.234, H2O.2 MN.2: 5 residues within 4Å: Chain A: D.96, T.98, D.107, E.234 Ligands: MN.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.96, A:D.107, A:E.234, H2O.2, H2O.2 MN.3: 4 residues within 4Å: Chain A: H.144, E.193 Chain B: H.144, E.193 6 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: A:H.144, B:H.144, H2O.2, H2O.4, H2O.4, H2O.4 MN.4: 4 residues within 4Å: Chain A: I.73, N.74, V.76, S.230 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:N.74, A:V.76, A:S.230, H2O.2 MN.5: 6 residues within 4Å: Chain B: D.107, H.170, T.201, E.203, E.234 Ligands: MN.6 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.107, B:H.170, B:E.203, B:E.234, H2O.4 MN.6: 5 residues within 4Å: Chain B: D.96, T.98, D.107, E.234 Ligands: MN.5 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.96, B:D.107, B:E.234, H2O.4, H2O.4 MN.7: 4 residues within 4Å: Chain B: I.73, N.74, V.76, S.230 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:N.74, B:V.76, B:S.230, H2O.4 MN.8: 6 residues within 4Å: Chain C: D.107, H.170, T.201, E.203, E.234 Ligands: MN.9 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.107, C:H.170, C:E.203, C:E.234, H2O.5 MN.9: 5 residues within 4Å: Chain C: D.96, T.98, D.107, E.234 Ligands: MN.8 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.96, C:D.107, C:E.234, H2O.5, H2O.5 MN.10: 4 residues within 4Å: Chain C: I.73, N.74, V.76, S.230 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:N.74, C:V.76, C:S.230, H2O.5 MN.11: 6 residues within 4Å: Chain D: D.107, H.170, T.201, E.203, E.234 Ligands: MN.12 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.107, D:H.170, D:E.203, D:E.234, H2O.7 MN.12: 5 residues within 4Å: Chain D: D.96, T.98, D.107, E.234 Ligands: MN.11 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.96, D:D.107, D:E.234, H2O.7, H2O.7 MN.13: 2 residues within 4Å: Chain D: H.144, E.193 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:H.144, D:E.193 MN.14: 4 residues within 4Å: Chain D: I.73, N.74, V.76, S.230 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:N.74, D:V.76, D:S.230, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, J.P. et al., Methionine excision captured by the structures of a methionine aminopeptidase. To be published

Release Date

2014-04-30

Peptides

Methionine aminopeptidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Methionine aminopeptidase

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