SMTL ID : 4juu.1

Crystal structure of a putative hydroxyproline epimerase from xanthomonas campestris (TARGET EFI-506516) with bound phosphate and unknown ligand

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: Y.159, H.161, E.223, R.302 Ligands: CL.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.159 Salt bridges: A:H.161, A:R.302 PO4.2: 6 residues within 4Å: Chain A: D.47, L.48, G.49, L.87, P.88, R.90 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.47, A:D.47, A:L.48, A:G.49 Salt bridges: A:R.90 PO4.3: 3 residues within 4Å: Chain A: C.95, I.127, H.132 2 PLIP interactions: 2 interactions with chain A Water bridges: A:C.95 Salt bridges: A:H.132 PO4.4: 10 residues within 4Å: Chain A: E.36, G.111, H.112, G.113, D.256, S.258, C.260, G.261, T.262, F.293 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.111, A:H.112, A:D.256, A:G.261 Water bridges: A:T.262, A:T.262 Salt bridges: A:H.112 PO4.6: 4 residues within 4Å: Chain B: C.95, I.127, H.132, R.133 3 PLIP interactions: 3 interactions with chain B Water bridges: B:S.93, B:C.95 Salt bridges: B:H.132

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: H.161, E.223, A.224 Ligands: PO4.1 Ligand excluded by PLIP

1 x UNL: UNKNOWN LIGAND

UNL.7: 11 residues within 4Å: Chain B: E.36, C.110, G.111, H.112, G.113, D.256, S.258, C.260, G.261, T.262, F.293 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.111, B:H.112, B:H.112, B:C.260, B:G.261, B:T.262 Water bridges: B:N.155, B:G.261 Salt bridges: B:H.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vetting, M.W. et al., Crystal structure of a putative hydroxyproline epimerase from xanthomonas campestris (TARGET EFI-506516) with bound phosphate and unknown ligand. To be Published

Release Date

2013-04-17

Peptides

Epimerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Epimerase