SMTL ID : 4jv9.1

Co-crystal structure of MDM2 with inhibitor (2S,5R,6S)-2-benzyl-5,6-bis(4-chlorophenyl)-4-methylmorpholin-3-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x 1MO: (2S,5R,6S)-2-benzyl-5,6-bis(4-chlorophenyl)-4-methylmorpholin-3-one(Non-covalent)

1MO.1: 11 residues within 4Å: Chain A: L.37, F.38, L.40, G.41, Q.42, I.44, M.45, Y.50, Q.55, V.76, I.82 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.37, A:L.40, A:Q.42, A:I.44, A:M.45, A:V.76 pi-Stacking: A:F.38

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: K.14, P.15, L.16 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.16 Water bridges: A:L.17, A:N.89, A:N.89 SO4.3: 4 residues within 4Å: Chain A: K.77, E.78, H.79, R.80 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.79, A:R.80 Water bridges: A:R.80 Salt bridges: A:R.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gonzalez-Lopez de Turiso, F. et al., Rational Design and Binding Mode Duality of MDM2-p53 Inhibitors. J.Med.Chem. (2013)

Release Date

2013-05-01

Peptides

E3 ubiquitin-protein ligase Mdm2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase Mdm2

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