SMTL ID : 4jwj.1 (1 other biounit)

Crystal structure of scTrm10(84)-SAH complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: D.67, K.68, K.71 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.68 Water bridges: A:K.68, A:K.71 SO4.4: 2 residues within 4Å: Chain A: P.154, R.156 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.156, A:R.156 Salt bridges: A:R.156 SO4.5: 2 residues within 4Å: Chain A: N.87, H.88 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.88 Salt bridges: A:H.88

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 19 residues within 4Å: Chain A: L.112, T.113, A.114, V.131, G.132, I.134, D.136, N.138, Y.140, L.143, C.144, R.156, R.157, L.158, R.170, V.171, L.172, T.174, V.177 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.171 Hydrogen bonds: A:G.132, A:N.138, A:Y.140, A:L.143, A:C.144, A:L.158, A:R.170, A:L.172 Water bridges: A:D.115, A:R.170

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 4 residues within 4Å: Chain A: R.11, S.50, R.53, R.54 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.11, A:R.11, A:R.11, A:R.53, A:R.53, A:R.54, A:R.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shao, Z. et al., Crystal structure of tRNA m1G9 methyltransferase Trm10: insight into the catalytic mechanism and recognition of tRNA substrate. Nucleic Acids Res. (2014)

Release Date

2013-10-16

Peptides

tRNA (guanine(9)-N1)-methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

tRNA (guanine(9)-N1)-methyltransferase

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