SMTL ID : 4jwo.1

The crystal structure of a possible phosphate binding protein from Planctomyces limnophilus DSM 3776

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: S.68, S.69, G.97, T.98, S.116, E.205, K.212 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.69, A:S.69, A:T.98, A:S.116, A:E.205 Water bridges: A:T.70, A:G.99, A:K.212 Salt bridges: A:K.212 SO4.2: 3 residues within 4Å: Chain A: D.194, N.221, S.222 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.222, A:S.222 Water bridges: A:D.194, A:N.221 SO4.3: 3 residues within 4Å: Chain A: N.225, Y.245, K.320 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.225, A:N.225, A:Y.245 Water bridges: A:K.320, A:K.320 Salt bridges: A:K.320

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 4 residues within 4Å: Chain A: Y.243, A.247, P.271 Ligands: PEG.6 No protein-ligand interaction detected (PLIP)

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 6 residues within 4Å: Chain A: F.191, T.219, A.220, N.221, I.226, G.230 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.220, A:N.221 Water bridges: A:A.220, A:Q.229 PEG.6: 6 residues within 4Å: Chain A: Y.243, E.317, K.320, Y.321, I.322 Ligands: FMT.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.317

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 2 residues within 4Å: Chain A: C.157, R.180 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.180 Water bridges: A:E.156, A:C.157, A:R.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of a possible phosphate binding protein from Planctomyces limnophilus DSM 3776. To be Published

Release Date

2013-04-24

Peptides

Phosphate binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphate binding protein