SMTL ID : 4jx6.3 (2 other biounits)

Structure of the carboxyl transferase domain Y628A from Rhizobium etli pyruvate carboxylase with pyruvate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.78 Å

Oligo State

homo-dimer

Ligands

1 x PYR: PYRUVIC ACID(Non-covalent)

PYR.1: 9 residues within 4Å: Chain A: R.113, Q.117, G.151, A.152, L.184, R.186, F.219, K.283, T.447 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.113, A:R.113, A:Q.117, A:T.447 Salt bridges: A:R.186

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: D.114, K.283, H.312, H.314, Q.348 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.114, A:H.312, A:H.314, H2O.1 ZN.4: 5 residues within 4Å: Chain B: D.114, K.283, H.312, H.314, Q.348 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.114, B:H.312, B:H.314

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: M.99, R.100, N.101, E.102, D.333 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:M.99, A:R.100, A:D.333, H2O.1, H2O.1 MG.5: 5 residues within 4Å: Chain B: M.99, R.100, N.101, E.102, D.333 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:M.99, B:E.102, B:D.333, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lietzan, A.D. et al., A Substrate-induced Biotin Binding Pocket in the Carboxyltransferase Domain of Pyruvate Carboxylase. J.Biol.Chem. (2013)

Release Date

2013-05-29

Peptides

Pyruvate carboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Pyruvate carboxylase

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