SMTL ID : 4jxb.1 (1 other biounit)

RipD (Rv1566c) from Mycobacterium tuberculosis: a non-catalytic NlpC/p60 domain protein, adaptation to peptidoglycan-binding function

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

monomer

Ligands

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 3 residues within 4Å: Chain A: F.23, D.47, A.48 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.47, A:A.48 Water bridges: A:S.49, A:Q.96, A:S.97 ACT.2: 3 residues within 4Å: Chain A: Q.53, K.62, R.65 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.53 Water bridges: A:K.62 Salt bridges: A:K.62 ACT.3: 4 residues within 4Å: Chain A: A.82, Y.101, G.103, K.104 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.82, A:Y.101, A:K.104 ACT.4: 3 residues within 4Å: Chain A: R.19, Q.115, V.116 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.116, A:V.116 Salt bridges: A:R.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Both, D. et al., RipD (Rv1566c) from Mycobacterium tuberculosis: adaptation of an NlpC/p60 domain to a non-catalytic peptidoglycan-binding function. Biochem.J. (2014)

Release Date

2013-10-30

Peptides

Invasion-associated protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Invasion-associated protein

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