SMTL ID : 4jxe.2 (1 other biounit)

Crystal structure of Schizosaccharomyces pombe sst2 catalytic domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: E.48, H.103, H.105, S.113, D.116 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.103, A:H.105, A:D.116, A:D.116, H2O.2 ZN.2: 4 residues within 4Å: Chain A: H.118, C.159, H.166, H.168 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.118, A:C.159, A:H.166, A:H.168

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: F.165, H.166 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.165 EDO.4: 3 residues within 4Å: Chain A: V.191, V.192, D.193 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.193, A:D.193 EDO.5: 5 residues within 4Å: Chain A: E.17, L.148, D.149, P.150, E.151 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.149, A:E.151 EDO.6: 7 residues within 4Å: Chain A: C.50, C.79, G.80, T.81, W.101, T.119, Y.123 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.79, A:T.81, A:Y.123

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.7: 7 residues within 4Å: Chain A: K.11, R.23, T.24, Y.26, Q.59, N.60, A.61 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.24, A:T.24, A:Y.26, A:Y.26, A:Q.59, A:N.60 TRS.8: 3 residues within 4Å: Chain A: H.66, H.94, Q.190 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.94, A:Q.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shrestha, R.K. et al., Insights into the Mechanism of Deubiquitination by JAMM Deubiquitinases from Cocrystal Structures of the Enzyme with the Substrate and Product. Biochemistry (2014)

Release Date

2014-04-30

Peptides

AMSH-like protease sst2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

AMSH-like protease sst2

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