SMTL ID : 4jxf.1

Crystal Structure of PLK4 Kinase with an inhibitor: 400631 ((1R,2S)-2-{3-[(E)-2-{4-[(DIMETHYLAMINO)METHYL]PHENYL}ETHENYL]-2H-INDAZOL-6-YL}-5'-METHOXYSPIRO[CYCLOPROPANE-1,3'-INDOL]-2'(1'H)-ONE)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x 631: (1R,2S)-2-{3-[(E)-2-{4-[(dimethylamino)methyl]phenyl}ethenyl]-2H-indazol-6-yl}-5'-methoxyspiro[cyclopropane-1,3'-indol]-2'(1'H)-one(Non-covalent)

631.1: 22 residues within 4Å: Chain A: L.15, G.16, F.20, V.23, A.36, K.38, L.70, L.86, E.87, M.88, C.89, H.90, G.92, E.93, S.137, L.139, L.140, A.150, D.151, T.156, Q.157 Ligands: EDO.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.15, A:L.15, A:V.23, A:V.23, A:A.36, A:L.86, A:A.150, A:D.151 Hydrogen bonds: A:C.89, A:C.89, A:Q.157 Water bridges: A:Q.157 pi-Stacking: A:F.20, A:F.20

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: R.132, S.137, N.138, D.151 Ligands: 631.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.132, A:D.151 Water bridges: A:N.138 EDO.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiu, W. et al., Crystal Structure of PLK4 Kinase with an inhibitor: 400631. To be Published

Release Date

2014-04-02

Peptides

Serine/threonine-protein kinase PLK4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase PLK4