SMTL ID : 4k0o.1

F17b-G lectin domain with bound GlcNAc(beta1-3)Gal

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x MBG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-methyl beta-D-galactopyranoside(Non-covalent)

MBG-NAG.1: 10 residues within 4Å: Chain A: A.43, D.88, T.89, W.109, Y.114, S.116, T.117, Q.118, G.119 Ligands: SO4.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.114, A:A.43, A:D.88, A:T.89, A:T.89, A:R.93, A:T.117, A:G.119

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: N.90, R.93 Ligands: MBG-NAG.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.90 Salt bridges: A:R.93 SO4.3: 2 residues within 4Å: Chain A: W.102, R.148 4 PLIP interactions: 4 interactions with chain A Water bridges: A:D.57, A:W.102, A:R.148 Salt bridges: A:R.148 SO4.4: 1 residues within 4Å: Chain A: R.47 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.47

2 x NI: NICKEL (II) ION(Non-covalent)

NI.5: 1 residues within 4Å: Chain A: H.23 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.23, H2O.3, H2O.3 NI.6: 3 residues within 4Å: Chain A: Q.161, T.162, T.163 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lonardi, E. et al., Structural Sampling of Glycan Interaction Profiles Reveals Mucosal Receptors for Fimbrial Adhesins of Enterotoxigenic Escherichia coli. Biology (Basel) (2013)

Release Date

2013-04-17

Peptides

F17b-G fimbrial adhesin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

F17b-G fimbrial adhesin

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