- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.3: 5 residues within 4Å:- Chain A: D.212, G.216, D.243, G.264, Q.266
6 PLIP interactions:5 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.212, A:G.216, A:D.243, A:G.264, A:Q.266, H2O.1
CA.6: 5 residues within 4Å:- Chain B: D.212, G.216, D.243, G.264, Q.266
6 PLIP interactions:5 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.212, B:G.216, B:D.243, B:G.264, B:Q.266, H2O.18
CA.11: 5 residues within 4Å:- Chain C: D.212, G.216, D.243, G.264, Q.266
6 PLIP interactions:5 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.212, C:G.216, C:D.243, C:G.264, C:Q.266, H2O.37
CA.14: 5 residues within 4Å:- Chain D: D.212, G.216, D.243, G.264, Q.266
6 PLIP interactions:5 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.212, D:G.216, D:D.243, D:G.264, D:Q.266, H2O.54
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.4: 3 residues within 4Å:- Chain A: N.65, W.356, I.388
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:I.388
- Hydrogen bonds: A:W.356
- Water bridges: A:N.65
NAG.7: 3 residues within 4Å:- Chain B: N.65, W.356, I.388
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:I.388
- Hydrogen bonds: B:N.65, B:W.356
NAG.12: 3 residues within 4Å:- Chain C: N.65, W.356, I.388
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:I.388
- Hydrogen bonds: C:W.356
- Water bridges: C:N.65
NAG.15: 3 residues within 4Å:- Chain D: N.65, W.356, I.388
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:I.388
- Hydrogen bonds: D:N.65, D:W.356
- 4 x G39: (3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid(Non-covalent)
G39.5: 13 residues within 4Å:- Chain A: R.37, E.38, D.70, R.71, W.97, R.143, A.165, E.195, E.196, R.211, N.213, R.290, Y.325
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:W.97, A:A.165
- Hydrogen bonds: A:E.38, A:R.71
- Water bridges: A:R.37, A:R.75, A:R.75
- Salt bridges: A:R.37, A:R.211, A:R.290
G39.8: 14 residues within 4Å:- Chain B: R.37, E.38, D.70, R.71, W.97, I.141, R.143, A.165, E.195, E.196, R.211, N.213, R.290, Y.325
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:W.97, B:R.143, B:A.165
- Hydrogen bonds: B:E.38, B:R.71, B:Y.325
- Water bridges: B:R.75, B:R.75, B:E.196, B:R.211
- Salt bridges: B:R.37, B:R.211, B:R.290
G39.13: 13 residues within 4Å:- Chain C: R.37, E.38, D.70, R.71, W.97, R.143, A.165, E.195, E.196, R.211, N.213, R.290, Y.325
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:W.97, C:A.165
- Hydrogen bonds: C:E.38, C:R.71, C:Y.325
- Water bridges: C:R.37, C:R.75, C:R.75
- Salt bridges: C:R.37, C:R.211, C:R.290
G39.16: 14 residues within 4Å:- Chain D: R.37, E.38, D.70, R.71, W.97, I.141, R.143, A.165, E.195, E.196, R.211, N.213, R.290, Y.325
11 PLIP interactions:11 interactions with chain D- Hydrophobic interactions: D:W.97, D:R.143, D:A.165
- Hydrogen bonds: D:E.38, D:R.71
- Water bridges: D:R.75, D:R.75, D:R.211
- Salt bridges: D:R.37, D:R.211, D:R.290
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wu, Y. et al., Induced opening of influenza virus neuraminidase N2 150-loop suggests an important role in inhibitor binding. Sci Rep (2013)
- Release Date
- 2013-06-05
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x G39: (3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wu, Y. et al., Induced opening of influenza virus neuraminidase N2 150-loop suggests an important role in inhibitor binding. Sci Rep (2013)
- Release Date
- 2013-06-05
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B