SMTL ID : 4k24.1

Structure of anti-uPAR Fab ATN-658 in complex with uPAR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.50 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain E: N.54, V.71, V.72, S.83 Ligands: MAN.3 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain E: N.202, H.205, N.235, Q.236 No protein-ligand interaction detected (PLIP)

1 x MAN: alpha-D-mannopyranose(Non-functional Binders)

MAN.3: 1 residues within 4Å: Ligands: NAG-NAG.1 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain E: N.174 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, X. et al., Identification of a New Epitope in uPAR as a Target for the Cancer Therapeutic Monoclonal Antibody ATN-658, a Structural Homolog of the uPAR Binding Integrin CD11b ( alpha M). Plos One (2014)

Release Date

2014-02-26

Peptides

Urokinase-type plasminogen activator: A
Vitronectin: B
anti-uPAR antibody, heavy chain: C
anti-uPAR antibody, light chain: D
Urokinase plasminogen activator surface receptor: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

D
L

E
U

Urokinase-type plasminogen activator

Vitronectin

anti-uPAR antibody, heavy chain

anti-uPAR antibody, light chain

Urokinase plasminogen activator surface receptor

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