SMTL ID : 4k3f.1

Crystal structure of a putative TonB-dependent receptor (PA5505) from Pseudomonas aeruginosa PAO1 at 1.60 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x MSE: SELENOMETHIONINE(Non-functional Binders)

MSE.1: 12 residues within 4Å: Chain A: H.14, Y.40, F.57, Q.58, H.59, Y.62, E.83, N.112, R.115, N.171, N.173, N.198 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:E.83, A:E.83, A:N.171, A:N.198 Water bridges: A:R.115, A:R.115, A:T.172, A:T.172 Salt bridges: A:R.115

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: S.48, T.72, D.73, L.74 Ligand excluded by PLIP

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 1 residues within 4Å: Chain A: R.151 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.151, A:R.151 Salt bridges: A:R.151 SO4.4: 2 residues within 4Å: Chain A: K.149, R.151 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.151 Salt bridges: A:R.151

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain A: K.122, E.190, G.191, D.193, S.194, P.195 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.191 Water bridges: A:K.122, A:D.193, A:Y.196 GOL.6: 1 residues within 4Å: Chain A: D.64 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.64 GOL.7: 5 residues within 4Å: Chain A: E.16, N.19, V.20, F.227, K.231 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.19, A:K.231, A:K.231 GOL.8: 3 residues within 4Å: Chain A: N.19, I.34, E.36 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.19 Water bridges: A:E.36 GOL.9: 1 residues within 4Å: Chain A: H.220 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a putative TonB-dependent receptor (PA5505) from Pseudomonas aeruginosa PAO1 at 1.60 A resolution. To be published

Release Date

2013-04-24

Peptides

Probable TonB-dependent receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable TonB-dependent receptor