SMTL ID : 4k46.1

Crystal Structure of Adenylate Kinase from Photobacterium profundum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 21 residues within 4Å: Chain A: A.8, P.9, G.10, A.11, G.12, K.13, G.14, T.15, R.119, M.120, R.123, T.132, Y.133, H.134, Y.137, N.138, G.198, K.200, A.201, V.202, V.205 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:G.10, A:A.11, A:G.12, A:K.13, A:G.14, A:T.15, A:T.15, A:R.119, A:Y.133, A:K.200 Water bridges: A:K.13, A:T.132, A:N.138, A:R.156 Salt bridges: A:K.13, A:R.123, A:R.123 pi-Cation interactions: A:R.119

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 16 residues within 4Å: Chain A: T.31, G.32, L.35, R.36, I.53, Q.57, L.58, V.59, I.64, G.85, F.86, R.88, Q.92, R.156, D.158, R.167 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:T.31, A:Q.57, A:V.59, A:Q.92, A:Q.92, A:R.167, A:R.167 Water bridges: A:K.13, A:S.30, A:G.32, A:G.32, A:R.36, A:R.36, A:R.88, A:R.88, A:R.156 Salt bridges: A:R.36, A:R.88, A:R.156 pi-Cation interactions: A:R.88

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 1 residues within 4Å: Chain A: M.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, Y.-J. et al., Alike but Different: Adenylate kinases from E. Coli, Aquifex, and P. profundum. To be Published

Release Date

2014-07-16

Peptides

Adenylate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Adenylate kinase