SMTL ID : 4k50.1 (3 other biounits)

Rhinovirus 16 polymerase elongation complex (r1_form)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.93 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: M.154, S.179, D.183, F.187, C.289, S.290 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.179, A:S.179, A:S.290 Water bridges: A:D.151, A:D.183, A:R.266

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: R.163, K.164, K.167 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.164 Water bridges: A:R.163, A:R.163 Salt bridges: A:R.163, A:K.167 ACT.3: 4 residues within 4Å: Chain A: K.336, D.338, M.339, F.362 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.362 Hydrogen bonds: A:M.339 Salt bridges: A:K.336 ACT.5: 5 residues within 4Å: Chain A: C.68, S.69, N.71, K.348, Y.349 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.348 Hydrogen bonds: A:S.69, A:N.71 ACT.6: 5 residues within 4Å: Chain A: V.121, G.124, K.126 Chain B: A.18, G.19 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:K.126 ACT.7: 6 residues within 4Å: Chain A: F.195, H.199, G.291, I.294 Chain B: U.21, C.22 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.195 Hydrogen bonds: A:G.291 Salt bridges: A:H.199 ACT.8: 3 residues within 4Å: Chain A: R.174 Chain B: G.20 Chain C: A.14 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.159

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: K.405, P.406, S.407 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.407, A:S.407

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gong, P. et al., Structures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts. Plos One (2013)

Release Date

2013-05-22

Peptides

RNA polymerase 3D-POL: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA polymerase 3D-POL

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