SMTL ID : 4k63.1 (3 other biounits)

Structure of an avian influenza H5 hemagglutinin from the influenza virus complexed with avian receptor analog LSTa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-GAL-SIA.1: 11 residues within 4Å: Chain A: Y.92, S.130, V.132, S.133, S.134, W.150, N.183, E.187, L.191, Q.223, G.225 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.223, A:Q.223, A:V.132, A:S.134, A:N.183, A:Q.223, A:G.225 NAG-GAL-SIA.3: 11 residues within 4Å: Chain C: Y.92, S.130, V.132, S.133, S.134, W.150, N.183, E.187, L.191, Q.223, G.225 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:Q.223, C:Q.223, C:V.132, C:S.134, C:N.183, C:Q.223, C:G.225 NAG-GAL-SIA.5: 11 residues within 4Å: Chain E: Y.92, S.130, V.132, S.133, S.134, W.150, N.183, E.187, L.191, Q.223, G.225 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:Q.223, E:Q.223, E:V.132, E:S.134, E:N.183, E:Q.223, E:G.225

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: N.166, N.237, A.239 Chain C: S.218 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.239 Hydrogen bonds: A:N.166, A:N.237 NAG.4: 4 residues within 4Å: Chain C: N.166, N.237, A.239 Chain E: S.218 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:A.239 Hydrogen bonds: C:N.166, C:N.237 NAG.6: 4 residues within 4Å: Chain A: S.218 Chain E: N.166, N.237, A.239 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:A.239 Hydrogen bonds: E:N.166, E:N.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, W. et al., An airborne transmissible avian influenza H5 hemagglutinin seen at the atomic level. Science (2013)

Release Date

2013-05-22

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

Hemagglutinin

Hemagglutinin

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