SMTL ID : 4k70.1 (1 other biounit)

Crystal Structure of N-terminal half of Pseudorabiesvirus UL37 protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: W.324, D.366, R.369, C.373, L.416, G.417, L.418 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.366, A:L.416

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: R.383, D.386, D.387 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:R.383, A:D.386, A:D.387, H2O.8 CA.3: 2 residues within 4Å: Chain A: D.83, D.85 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.83, A:D.83, A:D.85

12 x NA: SODIUM ION(Non-functional Binders)

NA.4: 4 residues within 4Å: Chain A: R.347, H.382, R.383, D.386 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.347, A:H.382, A:D.386 NA.6: 3 residues within 4Å: Chain A: D.83, W.84, D.85 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.84 NA.7: 3 residues within 4Å: Chain A: N.99, P.120, D.121 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.99 Water bridges: A:T.104 NA.8: 2 residues within 4Å: Chain A: Q.292, H.315 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.292, A:H.315 NA.9: 3 residues within 4Å: Chain A: V.250, G.251, E.252 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.252 NA.10: 1 residues within 4Å: Chain A: E.109 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.109, A:E.109 NA.11: 3 residues within 4Å: Chain A: R.182, D.387 Ligands: CL.13 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.182, A:D.387 NA.12: 1 residues within 4Å: Chain A: E.204 2 PLIP interactions: 2 interactions with chain A Water bridges: A:L.206, A:R.211 NA.15: 1 residues within 4Å: Chain A: E.93 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.93 NA.17: 3 residues within 4Å: Chain A: R.152, V.153, R.199 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.153, A:V.153, A:R.199, A:R.199 NA.18: 4 residues within 4Å: Chain A: Q.200, L.206, A.302, T.342 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.342 NA.19: 1 residues within 4Å: Chain A: E.86 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.86 Water bridges: A:A.40

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 1 residues within 4Å: Chain A: H.349 Ligand excluded by PLIP CL.13: 1 residues within 4Å: Ligands: NA.11 Ligand excluded by PLIP CL.14: 1 residues within 4Å: Chain A: H.425 Ligand excluded by PLIP

1 x NI: NICKEL (II) ION(Non-covalent)

NI.16: 1 residues within 4Å: Chain A: H.187 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.187, H2O.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pitts, J.D. et al., Crystal Structure of the Herpesvirus Inner Tegument Protein UL37 Supports Its Essential Role in Control of Viral Trafficking. J.Virol. (2014)

Release Date

2014-03-19

Peptides

UL37: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UL37

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